PaperBLAST – Find papers about a protein or its homologs

 

Align biolip::8bauA to PF08719 (NADAR)

biolip::8bauA has 189 amino acids

Query:       NADAR  [M=163]
Accession:   PF08719.15
Description: NADAR domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.3e-45  140.4   0.4    4.1e-45  140.1   0.4    1.1  1  biolip::8bauA  


Domain annotation for each sequence (and alignments):
>> biolip::8bauA  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.1   0.4   4.1e-45   4.1e-45       1     162 [.      13     185 ..      13     186 .. 0.90

  Alignments for each domain:
  == domain 1  score: 140.1 bits;  conditional E-value: 4.1e-45
          NADAR   1 fFykeeeepygvfsnfspseftvegeeesvkleeltyptaehymmaqKallfkdeea..aekilaakspkeakalgrkvrnfdeedWeevkeevve 94 
                    +Fy++++++ g++snf+p+eft ++ +        ++ ++e+y+m +K  +f  +++  a +il+ak p+ ak+lgr+v+n+d+e+W e+++ev+ 
  biolip::8bauA  13 YFYGQRDRKFGFLSNFYPCEFTDTEGR--------RFYSSEQYFMKRKQEMFDRDNEkvAIAILRAKAPAVAKKLGRQVENYDDEVWAEHRYEVML 100
                    8********************877766........8****************955554688899888***************************** PP

          NADAR  95 egnlaKFtqneelrelLlaTgdreLveasprDriWGiGlk.................addaaenrekwkGeNlLGkaLmevReeL 162
                    e++ +KF+++ee+ ++LlaTg + L eas +D+iWGiGl+                  d +ae+r+   G+NlLG+aLme R+ L
  biolip::8bauA 101 EALKLKFSSDEEMAAKLLATGAKRLYEASRHDAIWGIGLSvasvtrmfresvsfqrtGDVDAETRSLCFGKNLLGNALMEARAWL 185
                    ****************************************99999999988887655333366777777*************987 PP



Or compare biolip::8bauA to CDD or PaperBLAST