NP_417117.1 has 538 amino acids
Query: HamA [M=230]
Accession: PF08878.15
Description: HamA
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.1e-45 142.3 0.2 1.7e-45 141.7 0.2 1.3 1 NP_417117.1
Domain annotation for each sequence (and alignments):
>> NP_417117.1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 141.7 0.2 1.7e-45 1.7e-45 1 229 [. 294 519 .. 294 520 .. 0.98
Alignments for each domain:
== domain 1 score: 141.7 bits; conditional E-value: 1.7e-45
HamA 1 kelakflanniveyalsrseieklkkeeakelse.kaaskfrkdklsksGe.lGEllLyllleeflnapkllsKlelktssnmevkgaDgvhikiddd 96
k++a+ +++++ e+ l+++e++ ++k + e++e +++s f ++l++ +e lG +lL++ ++++++++++ ++l+ +++ + k ++vhi+ +d+
NP_417117.1 294 KHIADNVCQWLDEVFLRPKEMSDIHKLTFIEKRErLKNSVF--KSLHDVSEfLGRVLLHATIRQHHESQPIPCMLYVEKA--GAEKILENVHIVRRDP 387
6789*****************************99999999..9************************************..**************** PP
HamA 97 gklqLwlGeSKlysdlkda..isdaveslkkflnedslekelqlisnklddedeelaealkklldpstslddknveinfviligydsdilkklkeesd 192
+ +qLw+G S l++d++ a + +++++l+++ ++d+++++++ i + dd+ + l++++ ++ld s+++d + ++++fv+++gyds++l++ e++
NP_417117.1 388 EGDQLWIGFSELVTDINIAvrLPEIRDQLYED-ISDCIDTARKKILDIKDDN-YLLRHDIDEILDGSQPFDAHLDRFTFVLFVGYDSNLLTEP--ETP 481
*******************8889*********.*******************.************************************9999..9** PP
HamA 193 eykdeikeeiknkakkvkk.rikkeklkkikihvfllP 229
++d++++e ++k+ i+++++ +++ihvf+ P
NP_417117.1 482 GFEDDLEKETAVLFEKFAAdLIEDSPFANLCIHVFIYP 519
************************************99 PP
Or compare NP_417117.1 to CDD or PaperBLAST