SwissProt::P0DW39 has 271 amino acids
Query: HamA [M=230]
Accession: PF08878.15
Description: HamA
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3e-19 55.9 1.7 3.9e-19 55.5 1.7 1.1 1 SwissProt::P0DW39
Domain annotation for each sequence (and alignments):
>> SwissProt::P0DW39
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 55.5 1.7 3.9e-19 3.9e-19 4 171 .. 48 214 .. 45 235 .. 0.81
Alignments for each domain:
== domain 1 score: 55.5 bits; conditional E-value: 3.9e-19
HamA 4 akflanniveyalsrseieklkkeeakelse......kaaskfrkdklsksGelGEllLyllleeflnapkllsKlelktssnmevkgaDgv 89
k +a+++++y+ls+ + ++k++ + ++ + f+k++++++G+lGE++L +l + + + l+ Kl+++ + + +kg D++
SwissProt::P0DW39 48 IKSVAAWLIKYHLSEGKKRVIRKKQEILEKHdfaeyaQSLHVFPKSDKTQKGNLGEIFLSEYLSQTSGVQILVYKLHYNPNIDQSMKGDDVL 139
57899**********77666666666555557888889**************************************************9987 PP
HamA 90 hikidddgklqLwlGeSKlysd.lkdaisdaveslkkflnedslekelqlisnkldde.deelaealkklldpstslddknvei 171
+ ++d ++ lGeSK+ s k+a+++a e +k+ + l +l +i ++l ++ ++el e + +l + +s +++++
SwissProt::P0DW39 140 LV--NPD---KVLLGESKFRSTpNKRAVEEASELMKD---KLTLPMSLGFIADRLFEQgKDELGEVIFDLQFKMSS-IEIDIKN 214
65..555...79*******888346678888888885...6889999999**999999888888888888776666.4444433 PP
Or compare SwissProt::P0DW39 to CDD or PaperBLAST