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Align SwissProt::Q3L8N0 to PF09995 (DUF2236)

SwissProt::Q3L8N0 has 407 amino acids

Query:       DUF2236  [M=227]
Accession:   PF09995.9
Description: Uncharacterized protein conserved in bacteria (DUF2236)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------          -----------
    2.4e-23   69.6   1.7    5.3e-23   68.5   1.7    1.5  1  SwissProt::Q3L8N0  


Domain annotation for each sequence (and alignments):
>> SwissProt::Q3L8N0  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.5   1.7   5.3e-23   5.3e-23      11     212 ..     133     349 ..     127     363 .. 0.83

  Alignments for each domain:
  == domain 1  score: 68.5 bits;  conditional E-value: 5.3e-23
            DUF2236  11 llgalaalllqaahplvltgvldhstf.adplrRllrTaqfiltvvy.....gsgeeaeaaaarVrllHaavrgtd........asgeryga 88 
                        l+g l  +l+ +a p+  ++v   s+  ad+ +R+  Ta+  +++       + ++    +a++ r +Haavr            sg++  +
  SwissProt::Q3L8N0 133 LYG-LGSGLMSTAIPRESRAVY-YSKGgADMKDRIAKTARLGYDIGDldaylP-HGSMIVTAVKTRMVHAAVRHLLpqspawsqTSGGQKIP 221
                        344.666777689999999888.444448899********9999988644443.6668899************876888888766667777* PP

            DUF2236  89 inpedllwvhatfsasflraygrtvgpltaeeeeayyhewrrvgrllGvpdrllpatraafdayldemvlaelevdeearelgdarll.... 176
                        i + d + ++  + + ++r + +++ ++ ++++eay+h w + +++lGv+d+ +pat++a+ a   +++ + l++++e  +l++++l     
  SwissProt::Q3L8N0 222 ISQADIMVTWHSLATFVMRKMKQWGVRVNTADAEAYLHVWQVSAHMLGVSDEYIPATWDAANAQSKQVLDPILAHTPEGEALTEVLLGivae 313
                        ******************999999777*******************************************************6665557888 PP

            DUF2236 177 .parpalpllrvitrgllppalrellglpvpwssrde 212
                          a + +pl+ + +r++l+ ++ ++ gl ++ +  ++
  SwissProt::Q3L8N0 314 lDAGLTRPLIGAFSRYTLGGEVGDMIGLAKQ-PVLER 349
                        778899999*******************965.22222 PP



Or compare SwissProt::Q3L8N0 to CDD or PaperBLAST