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Align VIMSS33418 to PF09995 (DUF2236)

VIMSS33418 has 351 amino acids

Query:       DUF2236  [M=227]
Accession:   PF09995.9
Description: Uncharacterized protein conserved in bacteria (DUF2236)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence   Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.1e-57  180.1   1.6    4.1e-57  180.1   1.6    1.5  2  VIMSS33418  


Domain annotation for each sequence (and alignments):
>> VIMSS33418  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.1   1.6   4.1e-57   4.1e-57       1     221 [.      19     250 ..      19     254 .. 0.94
   2 ?   -2.6   0.2      0.29      0.29     192     192 ..     292     292 ..     258     336 .. 0.51

  Alignments for each domain:
  == domain 1  score: 180.1 bits;  conditional E-value: 4.1e-57
     DUF2236   1 wryagdelilllgalaalllqaahplvltgvldhstf.adplrRllrTaqfiltvvygsgeeaeaaaarVrllHaavrgtdasgerygainpedllwvh 98 
                 w+y+gd+++ ++g ++ + +q++ p +++gv +hs + ++pl+R+ r++  i++vvy+ g++a +++++++ +H++++g+da+g+ry+a+np++++w+h
  VIMSS33418  19 WKYFGDLRTGMMG-VWIGAIQNMYPELGAGVEEHSILlREPLQRVARSVYPIMGVVYD-GDRAAQTGQQIKGYHRTIKGVDAEGRRYHALNPDTFYWAH 115
                 9**********98.7778889**************88688******************.9*************************************** PP

     DUF2236  99 atfsasflraygrtvgpltaeeeeayyhewrrvgrllGvpdrllpatraafdayldemvlaelevdeearelgdarll..............parpalp 183
                 atf++++++++++++g lt++e+ ++++e +r++r++G+++r +p+++++f++y+d++++++le++ ++ ++ ++r+               +++p+ +
  VIMSS33418 116 ATFFMLVIKVAEYFCGGLTEAEKHQLFEEHVRWYRMYGMSMRPVPKSWEDFQDYWDRVCRDKLEINQATVDILQMRIPkprfvlmptpiwdqLFKPLIA 214
                 **************999**************************************************9999955555588888888999899******* PP

     DUF2236 184 llrvitrgllppalrellglpvpwssrdellvvalral 221
                   r+i++gl  pa+re+ g++  w++ de+l +++  +
  VIMSS33418 215 GQRWIAAGLFDPAVREKAGMH--WTPGDEVLLRVFGKV 250
                 *********************..********5555444 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.29
     DUF2236 192 l 192
                 +
  VIMSS33418 292 M 292
                 2 PP



Or compare VIMSS33418 to CDD or PaperBLAST