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Align VIMSS540572 to PF09995 (DUF2236)

VIMSS540572 has 255 amino acids

Query:       DUF2236  [M=227]
Accession:   PF09995.9
Description: Uncharacterized protein conserved in bacteria (DUF2236)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.9e-47  147.1   5.0    6.1e-47  146.8   5.0    1.0  1  VIMSS540572  


Domain annotation for each sequence (and alignments):
>> VIMSS540572  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.8   5.0   6.1e-47   6.1e-47      15     226 ..       5     222 ..       1     224 [. 0.91

  Alignments for each domain:
  == domain 1  score: 146.8 bits;  conditional E-value: 6.1e-47
      DUF2236  15 laalllqaahplvltgvldh...s.tf.adplrRllrTaqfiltvvygsgeeaeaaaarVrllHaavrgtdasgerygainpedllwvhatfsasflr 107
                   a++++q+a p+v+ gvl++   s ++  +p++R ++T+++++ ++ g+++++  +   V  +H++vr+t +s+  y+a++p+++lwv+a+++  f++
  VIMSS540572   5 AANVIMQLAVPGVGYGVLESpvdSgNVyKHPFKRARTTGTYLAVATIGTESDRALIRGAVDVAHRQVRSTASSPVSYNAFDPKLQLWVAACLYRYFVD 102
                  4789**************777665466466*****************************************99************************* PP

      DUF2236 108 aygrtvgpltaeeeeayyhewrrvgrllGvpdrllpatraafdayldemvlaelevdeearel....gdarll.......parpalpllrvitrgllp 194
                   ++ ++gpl ++ ++a+y++++r+g++l+vp++++p +r afd+y+ +  l+ l++d+++re     +            ++ +a+p+  ++t+g+l 
  VIMSS540572 103 QHEFLYGPLEDATADAVYQDAKRLGTTLQVPEGMWPPDRVAFDEYWKRS-LDGLQIDAPVREHlrgvA----SvaflpwpLRAVAGPFNLFATTGFLA 195
                  ***99******************************99************.6***********955552....0445567678999************* PP

      DUF2236 195 palrellglpvpwssrdellvvalralvrlar 226
                  p++r +++l+  ws +++++   + +l  ++r
  VIMSS540572 196 PEFRAMMQLE--WSQAQQRR---FEWLLSVLR 222
                  **********..********...888888777 PP



Or compare VIMSS540572 to CDD or PaperBLAST