NP_078850.3 has 568 amino acids
Query: NDNF [M=127] Accession: PF10179.13 Description: Neuron-derived neurotrophic factor, first Fn(III) domain Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.2e-46 144.1 0.1 1.7e-41 127.5 0.0 2.7 2 NP_078850.3 Domain annotation for each sequence (and alignments): >> NP_078850.3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 127.5 0.0 1.7e-41 1.7e-41 1 127 [] 192 335 .. 192 335 .. 0.88 2 ! 13.8 0.2 2.6e-06 2.6e-06 87 123 .. 526 561 .. 465 565 .. 0.63 Alignments for each domain: == domain 1 score: 127.5 bits; conditional E-value: 1.7e-41 NDNF 1 vtlkWkpsksv.ldkhaveYClvvnrehnykslCaaeeei..rkekq......eekeskskkeavlellkeqelkkerkleekes.....s......a 78 vtl+Wkps+++ l k++++YC+v+n+ehn+kslCa+e+++ ++ + + + +++a++ + +++ ker+++ k s + NP_078850.3 192 VTLAWKPSPTAsLLKQPIQYCVVINKEHNFKSLCAVEAKLsaDD--AfmmapkPGLDFSPFDFAHFGFPSDN-SGKERSFQAKPSpklgrHvysrpkV 286 79*************************************94434..355888889999**********6655.567777787777767661556777* PP NDNF 79 dlqivCvgkktvqtvseLkpdtqYyfdvFavdqkrntstaylgtfaetl 127 d+q++C+g+k+ +tvs+LkpdtqYyfdvF+v+ ++n stay+gtfa+t+ NP_078850.3 287 DIQKICIGNKNIFTVSDLKPDTQYYFDVFVVNINSNMSTAYVGTFARTK 335 **********************************************985 PP == domain 2 score: 13.8 bits; conditional E-value: 2.6e-06 NDNF 87 kktvqtvseLkpdtqYyfdvFavdqkrntstaylgtf 123 t t+++L+p ++Y +dv+++ + + s+ y + NP_078850.3 526 AVTTETIKGLQPGKSYLLDVYVIGH-GGHSVKYQSKV 561 45788******************75.46666666555 PP
Or compare NP_078850.3 to CDD or PaperBLAST