PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS6577311 to PF10300 (DUF3808)

VIMSS6577311 has 588 amino acids

Query:       DUF3808  [M=477]
Accession:   PF10300.9
Description: Protein of unknown function (DUF3808)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   1.9e-139  451.4   0.4   2.4e-139  451.2   0.4    1.1  1  VIMSS6577311  


Domain annotation for each sequence (and alignments):
>> VIMSS6577311  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  451.2   0.4  2.4e-139  2.4e-139       2     477 .]      39     500 ..      38     500 .. 0.95

  Alignments for each domain:
  == domain 1  score: 451.2 bits;  conditional E-value: 2.4e-139
       DUF3808   2 qaldlvLndkfeeaeellkeaskeSslhalgrgviafleAvltfepekmkkAsealkeaeklceksrkkaqkneskqnlssdslyepgleaevcyae 98 
                   ++ldl+L+d++++ +++++   ++    a+gr+  af++A+l++ep+++++A+eal++ae+++e+++k++++++     ++  +y++g+e ++c+++
  VIMSS6577311  39 YGLDLMLDDDAQGVKSAFS---DDTVESAVGRSGSAFYNAILGLEPKAIEEATEALYHAEQVTEERKKHFEHHD-----RPIGSYPAGMELQLCLSD 127
                   79****************6...4435569*********************************************.....55789************* PP

       DUF3808  99 alLlkAlLtflseslvefiKgglklRkaYqiykeilkeikklekkkrskteeeeesllseeknsqaeideflesGvnlgfGilqlviSllPpailkl 195
                   ++L++++L+f+s+s+v+++K+++++Rk++  +++++++++++++kk++ + ++ +        +++ idef+esGv +g+G+l++++S++Pp+++++
  VIMSS6577311 128 IYLMQSALGFVSDSIVDSMKAAYRIRKTFLSFSKMMEHVRDVQHKKETGEIKSLSP-------NATFIDEFIESGVITGYGVLTFLVSMFPPSLSRI 217
                   *******************************************9998864433333.......367******************************* PP

       DUF3808 196 LsvvGFsGdreeGLrlLweasksrnlraalallaLlfYytgvvqvldiddg.lkapleeleelLlksrkrfPksalwllfearieslkgnldeAlel 291
                   Ls+++F+G r+e+L+lLw+ask++n+++a+all+L++++++++++ +i+++    +le++ ++++++rkr++k+alw+++ea+i++l+g+ ++Ale+
  VIMSS6577311 218 LSLFSFHGVRKESLELLWRASKYPNIQGAIALLCLYAFNAMIQSLGSIPPSnYDQELEHCLQAVKDIRKRYSKGALWAVMEAKIYFLTGESQMALEM 314
                   ************************************************65557889***************************************** PP

       DUF3808 292 leeiieesqselkqvkhlclfelaltlvylheykeaaesfleLlklskwSkalYtYlaaacllelgre........ekkaeakekaeelfkevpkll 380
                    e +i   +s+++q+ ++  f++a+ +v ++++k+aa+++ eL +l++wS+a+Y+Y+a++cll++g+e        e++++++++  e++k++p+l+
  VIMSS6577311 315 EELSI---DSSMEQIIAMKGFDTAMLYVGMRKFKQAADAIIELEDLNSWSHAFYRYFAGCCLLQHGKEilgsggseEEAKASIDHGIEYLKNAPTLV 408
                   **555...9******************************************************************99999999************** PP

       DUF3808 381 qkkag.kslplekFilrKverfkarkkekkselldavlvspvlEliYvwngfsrmskeeleeesvkkleekaankeseeeeDdellkkLLkglvlrr 476
                   qkk++ ++lp+e +++rKv+++++r+++ +++++da+ v+p++EliY++ ++s  + +e+e +  ++le+++++     eeD++ lk++L+g++ r+
  VIMSS6577311 409 QKKKKrRTLPVEAYLIRKVQKWEDRAEKLNISIADAMDVPPYAELIYIFVICSLKDPKEAE-ALRADLETCKCS-----EEDEAGLKEFLLGVIDRH 499
                   ***999*******************************************************.99999*999877.....67***************9 PP

       DUF3808 477 l 477
                   l
  VIMSS6577311 500 L 500
                   7 PP



Or compare VIMSS6577311 to CDD or PaperBLAST