PaperBLAST – Find papers about a protein or its homologs

 

Align XP_002364442.1 to PF10300 (DUF3808)

XP_002364442.1 has 548 amino acids

Query:       DUF3808  [M=477]
Accession:   PF10300.9
Description: Protein of unknown function (DUF3808)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.7e-10   25.1   0.9    5.9e-10   24.5   0.9    1.2  1  XP_002364442.1  


Domain annotation for each sequence (and alignments):
>> XP_002364442.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.9   5.9e-10   5.9e-10     279     396 ..      78     195 ..      69     220 .. 0.79

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 5.9e-10
         DUF3808 279 eslkgnldeAlelleeiieesqselkqvkhlclfelaltlvylheykeaaesfleLlklsk.wSkalYtYlaaacllelgreekkaeakekaeel 372
                      ++  + + A++l+++     + + kq+ +++l ++a++ + l +y  a+ +++++++++  + ka+Y+   a c l+ +++++k+ + + +   
  XP_002364442.1  78 HQAVEKYTAAIDLICSN--TMTAQTKQILQVLLCNRAFCQINLENYGSAVVDAERVIQMNPlFAKAYYRRGCAYCCLSRYKKAQKDFE-RVIALS 169
                     4566788999****974..6899*************************************8579999998888888888888555555.445555 PP

         DUF3808 373 fkevpkllqkkag..kslplekFilr 396
                         p+ +++ +   k++ le F++ 
  XP_002364442.1 170 ATPDPSVVSRLNEckKQIRLEAFAAA 195
                     5667788888877889*******874 PP



Or compare XP_002364442.1 to CDD or PaperBLAST