PaperBLAST – Find papers about a protein or its homologs

 

Align NP_898842.2 to PF10350 (DUF2428)

NP_898842.2 has 1938 amino acids

Query:       DUF2428  [M=275]
Accession:   PF10350.9
Description: Putative death-receptor fusion protein (DUF2428)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   3.2e-107  343.9   0.0   3.2e-107  343.9   0.0    2.4  3  NP_898842.2  


Domain annotation for each sequence (and alignments):
>> NP_898842.2  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1      0.23      0.23      76     124 ..     683     732 ..     663     733 .. 0.67
   2 !  343.9   0.0  3.2e-107  3.2e-107       2     275 .]     939    1239 ..     938    1239 .. 0.93
   3 ?   -3.1   0.2       0.2       0.2     133     156 ..    1837    1861 ..    1836    1878 .. 0.73

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 0.23
      DUF2428  76 smKevslllgtllqklplqtekessdss.glltveqleeigelfleqLle 124
                   + e+s++l +l q+ + + +++ s  +   +t++q+++ ++ ++++L+e
  NP_898842.2 683 RIQESSQVLYKLEQRKSTPDSENGSIREqPSVTLQQYKNFMSSVCNILFE 732
                  56677777777776666655544433336567888888888888888875 PP

  == domain 2  score: 343.9 bits;  conditional E-value: 3.2e-107
      DUF2428    2 lverllelcerisevvlpvvsssspegllpedldseeesa.......................eeeee.............eeeeeeeekkekeek 61  
                   l+ rll l++r+s+vv pv++ssspegl+p d+ds+++s+                       +   e              + +++ e k+keek
  NP_898842.2  939 LLGRLLLLSYRLSTVVAPVIQSSSPEGLIPVDTDSASASRlqlilneiqprdtndyfnhtkilK---EcdsfdledlstsvSNIDSSAEVKGKEEK 1031
                   6789******************************999999999999888887777665555550...05555566677788888888889999999 PP

      DUF2428   62 k.kvtaqvvlvccWrsmKevslllgtllqklplqtekessdssglltveqleeigelfleqLlelrHrGAfekayvgFtklcerllrskdeelqkl 156 
                   + +vtaq+vl ccWrsmKev+lllgtl+q+lp+q+ +ess+   +ltv+q++eig++f+++Ll++rHrGAfe+ay+gF+kl+e l+r+++++lqkl
  NP_898842.2 1032 AcDVTAQMVLACCWRSMKEVALLLGTLCQLLPVQPGPESSNV--FLTVQQVKEIGDYFKQHLLQSRHRGAFELAYTGFVKLTEILNRCSNVSLQKL 1125
                   9**************************************999..**************************************************** PP

      DUF2428  157 peqwleelleeikss..ssklcitRRSAGlPfliqallssepkkskkklLkrtmkeLlelakkeaseeesesddesdlpqvhalNiLralfrdsrL 250 
                   peqwl+++leeik s  ssklc+tRRSAG+Pf+iqall+sepkks ++lLk tm+eL++la        s +d++ ++pqvhalNiLralfrd+rL
  NP_898842.2 1126 PEQWLRSVLEEIKGSdpSSKLCATRRSAGIPFYIQALLASEPKKSRMDLLKITMRELISLAL-------SADDSKGRVPQVHALNILRALFRDTRL 1214
                   ********************************************99***************8.......4677899******************** PP

      DUF2428  251 geevspyvadglilaiegfsspvWa 275 
                   ge+++pyva g+++ai gf+spvWa
  NP_898842.2 1215 GENIIPYVAGGAKAAILGFTSPVWA 1239
                   ************************7 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 0.2
      DUF2428  133 kayvgFtklcerllrskdee.lqkl 156 
                   ++++ F+ lc+  ++s++++ l++l
  NP_898842.2 1837 LCRQLFHLLCQSGWQSPHSQkLCHL 1861
                   5778899999999999996645544 PP



Or compare NP_898842.2 to CDD or PaperBLAST