PaperBLAST – Find papers about a protein or its homologs

 

Align NP_001188472.1 to PF10595 (FAM161A_B)

NP_001188472.1 has 716 amino acids

Query:       FAM161A_B  [M=364]
Accession:   PF10595.13
Description: Protein FAM161A/B
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.3e-55  173.5  39.7    3.3e-55  173.5  39.7    3.5  4  NP_001188472.1  


Domain annotation for each sequence (and alignments):
>> NP_001188472.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.5      0.14      0.14     288     340 ..      91     145 ..      84     150 .. 0.62
   2 !  173.5  39.7   3.3e-55   3.3e-55       2     364 .]     235     598 ..     234     598 .. 0.86
   3 !    1.1   1.1    0.0087    0.0087     305     341 ..     595     631 ..     595     648 .. 0.82
   4 ?   -8.0  10.0         1         1     299     354 ..     657     710 ..     642     716 .] 0.57

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.14
       FAM161A_B 288 slvkkrkkerkekeekeqqekkeeeerkkk..kkelapkvkkkvaaqdsskklqe 340
                     s++++ kk ++ k++  +   k e+  ++k  +ke++p v ++ + +dss+++ e
  NP_001188472.1  91 SNEEYFKKVEELKAAHIETMAKLEKMYQDKlhLKEVQPVVIREDSLSDSSRSVSE 145
                     5566666666666666666666665555552246677777776666666666665 PP

  == domain 2  score: 173.5 bits;  conditional E-value: 3.3e-55
       FAM161A_B   2 kiTvPkpfsfekRekekkakksirqkkveemleekqkk..eeaelkkrFkAkpvPatvkeplYeeimeeeekRReevreeskaitlqsekPfsFy 94 
                      iTvP+pf++  Re++kk+  s ++k+  em++++ kk  e  e+kk+F+A+pvPa+v++plY ++++++e+RR+ ++e+sk+ +l s+kPf+F 
  NP_001188472.1 235 TITVPEPFQMMIREQKKKE-ESMKSKSDIEMVHKALKKqeEDPEYKKKFRANPVPASVFLPLYHDLVKQKEERRRSLKEKSKEALLASQKPFKFI 328
                     69*************9999.99999999999999988876778**************************************************** PP

       FAM161A_B  95 erdkqkkeklkrkkletv.eerekkkfkankiPksvsdkllkkkeqeqeekrkervekrkqellessk.lpprmekheekkkakkqkkkekkssk 187
                      r++qk+    ++ ++ +  +++   fka++iP s+   + ++k++e+e++r+ r + r+qe l++s+ lp r +   ++ +    ++  k++  
  NP_001188472.1 329 AREEQKRAAREKQLRDFLkYKKKTNRFKARPIPRSTYGSTTNDKLKEEELYRNLRTQLRAQEHLQNSSpLPCRSACGCRNPRCP--EQAVKLKC- 420
                     ***9998765555555558999999************************************98776652777777766666444..33333322. PP

       FAM161A_B 188 ekeetfepkraksiPdfeklhkeFqkelakkkkklkpTepepfnlqes.hksadrdyldsenesiretkekkakkkldekarl........asik 273
                           + k+  + Pdfe l + +qk+l + k  +  T+ +pf+l+ s h s +r+ + +  e   e++ k++  +  +  r+        +   
  NP_001188472.1 421 ------KHKVRCPTPDFEDLPERYQKHLSEHKSPKLLTVCKPFDLHASpHASIKREKILADIEA-DEENLKETRWPYLSPRRKspvrcagvNPVP 508
                     ......23344567*********************************98899999887655533.466666666666555555677777766666 PP

       FAM161A_B 274 pkeqPrsgstkkteslvkkrkkerkekeekeqqekkeeeerkkkkkelapkvkkkvaaqdsskklqeerkeklkkerkedrqqekeyeqel 364
                      +  P+   t +++ ++++++ +++ek+  e++++  + ++k++ kel++  + +++a ds+++l + +k ++k +rk ++++ +ey++el
  NP_001188472.1 509 CNCNPP-VPTVSSRGREQAVRRSLEEKKMLEEERNRILTKQKQRMKELQKLLTTRAKAYDSHQSLAQISKSRVKCLRKSEKERMREYQREL 598
                     677788.99***************************999999999999999*************************************986 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.0087
       FAM161A_B 305 qqekkeeeerkkkkkelapkvkkkvaaqdsskklqee 341
                     q e +e+ee+ kk+  l ++v++k a ++++k+  ++
  NP_001188472.1 595 QRELEEREEKLKKRPLLFERVAQKNARMAAEKHYSNT 631
                     556788888889999999*******999999987766 PP

  == domain 4  score: -8.0 bits;  conditional E-value: 1
       FAM161A_B 299 ekeekeqqekkeeeerkkkkkelapkvkkkvaaqdsskklqeerkeklkkerkedr 354
                     ++e k+  e ke  + ++k +e+ +++++ + +  +s+  ++e++e+  +e +e++
  NP_001188472.1 657 NQETKSVTEDKESFNEEEKIEER-ENGEENYFIDTNSQDSYKEKDEA-NEESEEEK 710
                     55666666666666666666665.55555555555555555555555.23333333 PP



Or compare NP_001188472.1 to CDD or PaperBLAST