PaperBLAST – Find papers about a protein or its homologs

 

Align WP_011002476.1 to PF11769 (DUF3313)

WP_011002476.1 has 220 amino acids

Query:       DUF3313  [M=186]
Accession:   PF11769.12
Description: Protein of unknown function (DUF3313)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-60  190.7   0.2    1.4e-60  190.5   0.2    1.0  1  WP_011002476.1  


Domain annotation for each sequence (and alignments):
>> WP_011002476.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.5   0.2   1.4e-60   1.4e-60       2     185 ..      30     214 ..      29     215 .. 0.98

  Alignments for each domain:
  == domain 1  score: 190.5 bits;  conditional E-value: 1.4e-60
         DUF3313   2 ysgflsdYsgLkpesgakggav.lryvdpgvdlakydkviiePvvlypgpdp.eeklsaedlqllanyldraLkkeLskrfrlvaspgpgtLrvr 94 
                     ysg++s+ s++kp+ ++++g++ ++y +++vd++ky+ + i+Pv +y+g+d+   ++s+ d+++la y++ +++++L++rf+l++ +gp+tLr++
  WP_011002476.1  30 YSGIASS-SYMKPNLQDASGRMpYSY-ATQVDWRKYRRIQIDPVAVYRGADSqFGDMSETDRAALAGYMQAKFAEKLQSRFELANDAGPNTLRLK 122
                     9******.******************.99************************889*************************************** PP

         DUF3313  95 laiTgvkpttpvlatlsvllPiglvvnlvqaat.gertgvGslaveaeitDavtgellaaavdkragnkintsarvsklsdakaaidkwadd 185
                     l++Tg+++ttpvl+tls+++++g ++n+vq+a+ +e+t++G +++++ei+Da++++ll a+v+k++++ +n +a++++ls+ak +++k+ad+
  WP_011002476.1 123 LTLTGADTTTPVLGTLSRFDIAGGIYNGVQTARgREGTFTGFVMYAVEIYDASNNRLLNAYVTKQYPSPWNLGASIGSLSAAKTGVEKGADA 214
                     *********************************************************************977******************97 PP



Or compare WP_011002476.1 to CDD or PaperBLAST