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Align NP_001257891.1 to PF11879 (DUF3399)

NP_001257891.1 has 655 amino acids

Query:       DUF3399  [M=104]
Accession:   PF11879.8
Description: Domain of unknown function (DUF3399)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-47  146.2   6.5    4.7e-47  144.9   6.5    1.7  1  NP_001257891.1  


Domain annotation for each sequence (and alignments):
>> NP_001257891.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.9   6.5   4.7e-47   4.7e-47       1     103 [.     442     562 ..     442     563 .. 0.97

  Alignments for each domain:
  == domain 1  score: 144.9 bits;  conditional E-value: 4.7e-47
         DUF3399   1 lqskrnglledalelteseeeealvtkstsllEsqHHHLLhCLEKtt...................nheFvdEqtyeenllevslqkrps.rsps 75 
                     l+skrngll++alelt++ eee ++ k+tsl+EsqHHHLLhCLEKtt                   nheF+dEq++e+n++e+s+q++ps rsps
  NP_001257891.1 442 LHSKRNGLLNEALELTGTPEEE-HMGKTTSLIESQHHHLLHCLEKTTglsylvddpllsvrtstikNHEFIDEQMFEQNCMESSMQNYPStRSPS 535
                     79***************99999.789********************************************************************* PP

         DUF3399  76 lssqeglassCCsrrakkrairlanstv 103
                     lss++gl+++CCsrr+kk++ +l+ns++
  NP_001257891.1 536 LSSHSGLTTTCCSRRSKKTT-HLPNSNL 562
                     ******************77.*****97 PP



Or compare NP_001257891.1 to CDD or PaperBLAST