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Align NP_004970.3 to PF11879 (DUF3399)

NP_004970.3 has 647 amino acids

Query:       DUF3399  [M=104]
Accession:   PF11879.8
Description: Domain of unknown function (DUF3399)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.9e-43  132.3   1.2    8.3e-43  131.3   1.2    1.6  1  NP_004970.3  


Domain annotation for each sequence (and alignments):
>> NP_004970.3  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.3   1.2   8.3e-43   8.3e-43       1     104 []     447     550 ..     447     550 .. 0.95

  Alignments for each domain:
  == domain 1  score: 131.3 bits;  conditional E-value: 8.3e-43
      DUF3399   1 lqskrnglledalelteseeeealvtkstsllEsqHHHLLhCLEKttnheFvdEqtyeenllevslqkrpsrspslssqegl....assCCsrrakkr 94 
                  lq+k+ng led    ++s ee+al+++++s++E+qHHHLLhCLEKtt+heF+dE t++e+l +vs + r+srs+s+ssq        ssCC+rrak+r
  NP_004970.3 447 LQYKQNGGLED----SGSGEEQALCVRNRSAFEQQHHHLLHCLEKTTCHEFTDELTFSEALGAVSPGGRTSRSTSVSSQPVGpgslLSSCCPRRAKRR 540
                  79******999....8999************************************************************65446669*********** PP

      DUF3399  95 airlanstvs 104
                  airlanst+s
  NP_004970.3 541 AIRLANSTAS 550
                  *******975 PP



Or compare NP_004970.3 to CDD or PaperBLAST