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Align NP_004971.2 to PF11879 (DUF3399)

NP_004971.2 has 655 amino acids

Query:       DUF3399  [M=104]
Accession:   PF11879.8
Description: Domain of unknown function (DUF3399)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.5e-47  146.5   5.6    3.7e-47  145.3   5.6    1.7  1  NP_004971.2  


Domain annotation for each sequence (and alignments):
>> NP_004971.2  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.3   5.6   3.7e-47   3.7e-47       1     103 [.     442     562 ..     442     563 .. 0.97

  Alignments for each domain:
  == domain 1  score: 145.3 bits;  conditional E-value: 3.7e-47
      DUF3399   1 lqskrnglledalelteseeeealvtkstsllEsqHHHLLhCLEKtt...................nheFvdEqtyeenllevslqkrps.rspslss 78 
                  l+skrngll++alelt++ eee ++ k+tsl+EsqHHHLLhCLEKtt                   nheF+dEq++e+n++e+s+q++ps rspslss
  NP_004971.2 442 LHSKRNGLLNEALELTGTPEEE-HMGKTTSLIESQHHHLLHCLEKTTglsylvddpllsvrtstikNHEFIDEQMFEQNCMESSMQNYPStRSPSLSS 538
                  79***************99999.789************************************************************************ PP

      DUF3399  79 qeglassCCsrrakkrairlanstv 103
                  + gl+++CCsrr+kk++ +l+ns++
  NP_004971.2 539 HPGLTTTCCSRRSKKTT-HLPNSNL 562
                  ***************77.*****97 PP



Or compare NP_004971.2 to CDD or PaperBLAST