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Align NP_036413.1 to PF11879 (DUF3399)

NP_036413.1 has 630 amino acids

Query:       DUF3399  [M=104]
Accession:   PF11879.8
Description: Domain of unknown function (DUF3399)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.4e-46  140.9   9.7      2e-45  139.7   9.7    1.7  1  NP_036413.1  


Domain annotation for each sequence (and alignments):
>> NP_036413.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.7   9.7     2e-45     2e-45       1     104 []     445     546 ..     445     546 .. 0.96

  Alignments for each domain:
  == domain 1  score: 139.7 bits;  conditional E-value: 2e-45
      DUF3399   1 lqskrnglledalelteseeeealvtkstsllEsqHHHLLhCLEKttnheFvdEqtyeenllevslqkrps.rspslssqeglassCCsrrakkrair 97 
                  +qskrngll++  +l++se+e+a v+ks s++E+qHHHLLhCLEKttnheFvdEq++ee+++ev++ +rps +spslssq+g++s+CCsrr+kk ++r
  NP_036413.1 445 MQSKRNGLLSN--QLQSSEDEQAFVSKSGSSFETQHHHLLHCLEKTTNHEFVDEQVFEESCMEVATVNRPSsHSPSLSSQQGVTSTCCSRRHKK-TFR 539
                  79********9..6678999**************************************************99**********************.77* PP

      DUF3399  98 lanstvs 104
                  ++n++vs
  NP_036413.1 540 IPNANVS 546
                  ****986 PP



Or compare NP_036413.1 to CDD or PaperBLAST