PaperBLAST – Find papers about a protein or its homologs

 

Align P17971 to PF11879 (DUF3399)

P17971 has 571 amino acids

Query:       DUF3399  [M=104]
Accession:   PF11879.8
Description: Domain of unknown function (DUF3399)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      7e-22   64.1   0.2    1.9e-21   62.7   0.2    1.7  1  P17971    


Domain annotation for each sequence (and alignments):
>> P17971  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.7   0.2   1.9e-21   1.9e-21      13      92 ..     455     540 ..     445     552 .. 0.65

  Alignments for each domain:
  == domain 1  score: 62.7 bits;  conditional E-value: 1.9e-21
  DUF3399  13 lelteseeeealvtkstsllEsqHHHLLhCLEKttnheFvd.Eqtyeenllevslqkrpsrsp..slssqegl....assCCsrrak 92 
              +  +es  e     + ++++E qHHHLL+CLEKtt++eFv+ E  ++ +      +  p+ sp  s  s  gl    + +CCs+r++
   P17971 455 WAAQESGIELDDNYRDEDIFELQHHHLLRCLEKTTDREFVElEIPFNGQPKRP-GSPSPMASPahSTNSAAGLlqscCGRCCSQRYQ 540
              44444444445567889************************9****9665543.334444444004444555566667777777776 PP



Or compare P17971 to CDD or PaperBLAST