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Align SwissProt::P59994 to PF11879 (DUF3399)

SwissProt::P59994 has 178 amino acids

Query:       DUF3399  [M=104]
Accession:   PF11879.8
Description: Domain of unknown function (DUF3399)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------          -----------
    8.9e-45  137.6   2.3    1.4e-44  137.0   2.3    1.3  1  SwissProt::P59994  


Domain annotation for each sequence (and alignments):
>> SwissProt::P59994  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.0   2.3   1.4e-44   1.4e-44       1     104 []      10     113 ..      10     113 .. 0.94

  Alignments for each domain:
  == domain 1  score: 137.0 bits;  conditional E-value: 1.4e-44
            DUF3399   1 lqskrnglledalelteseeeealvtkstsllEsqHHHLLhCLEKttnheFvdEqtyeenllevslqkrpsrspslssqegl....assCCs 88 
                        lq+k+ng led    ++s ee+al+++++s++E+qHHHLLhCLEKtt+heF+dE t++e+l +vsl+ r+srs+s+ssq        ssCC+
  SwissProt::P59994  10 LQYKQNGGLED----NGSGEEQALCVRNRSAFEQQHHHLLHCLEKTTCHEFTDELTFSEALGAVSLGGRTSRSTSVSSQPVGpsslLSSCCP 97 
                        79******999....8999************************************************************544455599**** PP

            DUF3399  89 rrakkrairlanstvs 104
                        rrak+rairlanst+s
  SwissProt::P59994  98 RRAKRRAIRLANSTAS 113
                        *************985 PP



Or compare SwissProt::P59994 to CDD or PaperBLAST