SwissProt::P59994 has 178 amino acids
Query: DUF3399 [M=76] Accession: PF11879.12 Description: Domain of unknown function (DUF3399) Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.2e-36 111.3 4.6 1.2e-36 111.3 4.6 1.5 2 SwissProt::P59994 Domain annotation for each sequence (and alignments): >> SwissProt::P59994 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 111.3 4.6 1.2e-36 1.2e-36 2 75 .. 34 112 .. 33 113 .. 0.96 2 ? -3.3 0.1 0.72 0.72 46 61 .. 138 154 .. 130 156 .. 0.51 Alignments for each domain: == domain 1 score: 111.3 bits; conditional E-value: 1.2e-36 DUF3399 2 tsllEsQHHHLLhCLEKTTnheFvdEqtyeenclevslqkrpsrspslssq....egltssCCsrrakr.sirlpnssl 75 +s++E+QHHHLLhCLEKTT+heF+dE t++e++ +vsl r+srs+s+ssq ++l ssCC+rrakr +irl+ns++ SwissProt::P59994 34 RSAFEQQHHHLLHCLEKTTCHEFTDELTFSEALGAVSLGGRTSRSTSVSSQpvgpSSLLSSCCPRRAKRrAIRLANSTA 112 79****************************************************99************77*******86 PP == domain 2 score: -3.3 bits; conditional E-value: 0.72 DUF3399 46 sps.lssqegltssCCs 61 s+ ++++l C s SwissProt::P59994 138 SSLnAKPHDSLDLNCDS 154 33202234666666655 PP
Or compare SwissProt::P59994 to CDD or PaperBLAST