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Align SwissProt::P59995 to PF11879 (DUF3399)

SwissProt::P59995 has 630 amino acids

Query:       DUF3399  [M=104]
Accession:   PF11879.8
Description: Domain of unknown function (DUF3399)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------          -----------
    1.7e-45  139.9   9.0    4.1e-45  138.7   9.0    1.7  1  SwissProt::P59995  


Domain annotation for each sequence (and alignments):
>> SwissProt::P59995  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.7   9.0   4.1e-45   4.1e-45       1     104 []     445     546 ..     445     546 .. 0.96

  Alignments for each domain:
  == domain 1  score: 138.7 bits;  conditional E-value: 4.1e-45
            DUF3399   1 lqskrnglledalelteseeeealvtkstsllEsqHHHLLhCLEKttnheFvdEqtyeenllevslqkrps.rspslssqeglassCCsrra 91 
                        +qskrngll++  +l++seee a v+ks s++E+qHHHLLhCLEKttnheFvdEq++ee+++ev++ +rps +spslssq+g++s+CCsrr+
  SwissProt::P59995 445 MQSKRNGLLSN--QLQSSEEEPAFVSKSGSSFETQHHHLLHCLEKTTNHEFVDEQVFEESCMEVATVNRPSsHSPSLSSQQGVTSTCCSRRH 534
                        79********9..6678999**************************************************99******************** PP

            DUF3399  92 kkrairlanstvs 104
                        kk ++r++n++vs
  SwissProt::P59995 535 KK-TFRIPNANVS 546
                        **.77*****986 PP



Or compare SwissProt::P59995 to CDD or PaperBLAST