PaperBLAST – Find papers about a protein or its homologs

 

Align SwissProt::Q9TTT5 to PF11879 (DUF3399)

SwissProt::Q9TTT5 has 655 amino acids

Query:       DUF3399  [M=104]
Accession:   PF11879.8
Description: Domain of unknown function (DUF3399)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------          -----------
    2.7e-47  145.7   5.8    6.6e-47  144.5   5.8    1.7  1  SwissProt::Q9TTT5  


Domain annotation for each sequence (and alignments):
>> SwissProt::Q9TTT5  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.5   5.8   6.6e-47   6.6e-47       1     103 [.     442     562 ..     442     563 .. 0.97

  Alignments for each domain:
  == domain 1  score: 144.5 bits;  conditional E-value: 6.6e-47
            DUF3399   1 lqskrnglledalelteseeeealvtkstsllEsqHHHLLhCLEKtt...................nheFvdEqtyeenllevslqkrps.r 72 
                        l+skrngll++alelt++ eee ++ k++sl+EsqHHHLLhCLEKtt                   nheF+dEq++e+n++e+s+q++ps r
  SwissProt::Q9TTT5 442 LHSKRNGLLNEALELTGTPEEE-HMGKTASLIESQHHHLLHCLEKTTglsylvddpllsvrtstikNHEFIDEQMFEQNCMESSMQNYPStR 532
                        79***************99999.789****************************************************************** PP

            DUF3399  73 spslssqeglassCCsrrakkrairlanstv 103
                        spslss+ gl+++CCsrr+kk++ +l+ns++
  SwissProt::Q9TTT5 533 SPSLSSHAGLTTTCCSRRSKKTT-HLPNSNL 562
                        *********************77.*****97 PP



Or compare SwissProt::Q9TTT5 to CDD or PaperBLAST