PaperBLAST – Find papers about a protein or its homologs

 

Align XP_006710693.1 to PF11879 (DUF3399)

XP_006710693.1 has 636 amino acids

Query:       DUF3399  [M=104]
Accession:   PF11879.8
Description: Domain of unknown function (DUF3399)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.7e-49  152.1   8.6    6.8e-49  150.9   8.6    1.7  1  XP_006710693.1  


Domain annotation for each sequence (and alignments):
>> XP_006710693.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.9   8.6   6.8e-49   6.8e-49       1     103 [.     442     543 ..     442     544 .. 0.97

  Alignments for each domain:
  == domain 1  score: 150.9 bits;  conditional E-value: 6.8e-49
         DUF3399   1 lqskrnglledalelteseeeealvtkstsllEsqHHHLLhCLEKttnheFvdEqtyeenllevslqkrps.rspslssqeglassCCsrrakkr 94 
                     l+skrngll++alelt++ eee ++ k+tsl+EsqHHHLLhCLEKttnheF+dEq++e+n++e+s+q++ps rspslss+ gl+++CCsrr+kk+
  XP_006710693.1 442 LHSKRNGLLNEALELTGTPEEE-HMGKTTSLIESQHHHLLHCLEKTTNHEFIDEQMFEQNCMESSMQNYPStRSPSLSSHPGLTTTCCSRRSKKT 535
                     79***************99999.789********************************************************************7 PP

         DUF3399  95 airlanstv 103
                     + +l+ns++
  XP_006710693.1 536 T-HLPNSNL 543
                     7.*****97 PP



Or compare XP_006710693.1 to CDD or PaperBLAST