PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS245673 to PF11896 (DUF3416)

VIMSS245673 has 675 amino acids

Query:       DUF3416  [M=179]
Accession:   PF11896.8
Description: Domain of unknown function (DUF3416)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.1e-65  204.6   1.3    1.3e-64  203.9   1.3    1.4  1  VIMSS245673  


Domain annotation for each sequence (and alignments):
>> VIMSS245673  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  203.9   1.3   1.3e-64   1.3e-64       1     179 []      19     206 ..      19     206 .. 0.96

  Alignments for each domain:
  == domain 1  score: 203.9 bits;  conditional E-value: 1.3e-64
      DUF3416   1 griaIedvsPevdgGrfpaKavvGetvpVeAdvfrdGhdalaAtlvlrragekewqevpMt..pggndrweasftpdelGryeftveAWvDpfatWrh 96 
                  gri++ dv+P+v+ Gr paKav+Ge+++V+A+vfr+Ghda++A++vlr+ + +   ++pM+  + g+drw a++t+ e+G++++tveAW Dp++tWrh
  VIMSS245673  19 GRIPVLDVRPVVQRGRRPAKAVTGESFEVSATVFREGHDAVGANVVLRDPRGRPGPWTPMRelAPGTDRWGATVTAGETGTWSYTVEAWGDPVTTWRH 116
                  69**********************************************87779********99666******************************** PP

      DUF3416  97 dlekkveagqdveleleeGarlleraaeraea......aalraaaaalrdd...peerlaaalseevaallaryplrelatrseklpveVdR 179
                  ++++k++ag d++l leeGarl eraa  a++      ++l aa++alrd+   +++rlaaal+++v+a+lar+plr+l+t+s++lp+ V+R
  VIMSS245673 117 HARIKIPAGLDTDLVLEEGARLYERAA--ADVpgredrRELLAAVDALRDEsrpAASRLAAALTPQVDAVLARHPLRDLVTSSDPLPLLVER 206
                  ***************************..54457999999********887788999**********************************9 PP



Or compare VIMSS245673 to CDD or PaperBLAST