PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS247481 to PF11896 (DUF3416)

VIMSS247481 has 669 amino acids

Query:       DUF3416  [M=179]
Accession:   PF11896.8
Description: Domain of unknown function (DUF3416)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.6e-64  203.0   0.5    4.2e-64  202.3   0.5    1.3  1  VIMSS247481  


Domain annotation for each sequence (and alignments):
>> VIMSS247481  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  202.3   0.5   4.2e-64   4.2e-64       1     179 []      10     197 ..      10     197 .. 0.94

  Alignments for each domain:
  == domain 1  score: 202.3 bits;  conditional E-value: 4.2e-64
      DUF3416   1 griaIedvsPevdgGrfpaKavvGetvpVeAdvfrdGhdalaAtlvlrragekewqevpMt..pggndrweasftpdelGryeftveAWvDpfatWrh 96 
                  gri++ dv+P+v+ Gr paKav+Get++V+A+vfr+Ghda+aA++vl++ + +   ++pM+  + g drw a++tp ++G+++++veAW+Dp+atWrh
  VIMSS247481  10 GRIPVRDVQPVVEYGRRPAKAVTGETFEVTATVFREGHDAVAANVVLKDPEGRPGPWTPMRelAPGSDRWGATVTPGAPGNWTYRVEAWSDPVATWRH 107
                  69**********************************************87779********99666******************************** PP

      DUF3416  97 dlekkveagqdveleleeGarlleraaeraea....aalraaaaal.rdd..peerlaaalseevaallaryplrelatrseklpveVdR 179
                  ++++kv+ag+d+ l leeG +l +raa+   +    ++l aaa+al +d+   ++rlaaal+++v+a+lar+plr+l+t+s++lp+ V+R
  VIMSS247481 108 AARIKVPAGIDAGLVLEEGSELYRRAAAGVPKdsgrDVLLAAATALlDDTlpVATRLAAALTPQVDAVLARHPLRDLVTSSDPLPLLVER 197
                  ***************************655449999888888888844448899***********************************9 PP



Or compare VIMSS247481 to CDD or PaperBLAST