PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS5916351 to PF11896 (GlgE_dom_N_S)

VIMSS5916351 has 675 amino acids

Query:       GlgE_dom_N_S  [M=179]
Accession:   PF11896.12
Description: Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase, domain N/S
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-55  174.8   0.2    2.3e-55  173.8   0.2    1.5  1  VIMSS5916351  


Domain annotation for each sequence (and alignments):
>> VIMSS5916351  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.8   0.2   2.3e-55   2.3e-55       1     179 []       3     194 ..       3     194 .. 0.93

  Alignments for each domain:
  == domain 1  score: 173.8 bits;  conditional E-value: 2.3e-55
  GlgE_dom_N_S   1 grivIedVsPevdgGrfpaKavvGeeveVeAdvfrdGhdavaatvvlr....aegekewrevpMt..pggnDrweaeftldeeGrwefrveAWsDpf 91 
                   gr+ I+dV+P++ +G+ paKavvGe v+V+A v+r+Ghda+aat+ +     ++ ++e  +++M+  p+++D+ +a f +d +G+w+frv+AWsDp+
  VIMSS5916351   3 GRLGIDDVRPRILDGN-PAKAVVGEIVPVSAIVWREGHDAIAATLNVSgpedSSVAAEPIQIHMRptPDNQDQSNAFFVPDVPGNWTFRVDAWSDPM 98 
                   69*************9.*******************************7654223466778888899999*************************** PP

  GlgE_dom_N_S  92 atWrhdlekkveagqdvele...leeGaelleraaeraee...ealraaaaalrde..peerlaaalspelaallarhplrelvtrseklpvlvdR 179
                   atWrh+++ k+eagq  ++    +e+Ga+l+eraae+ ++    al ++a++lr+    ++rla+al++++++ll+ +plrelvt +e+l+v+v+R
  VIMSS5916351  99 ATWRHAITTKIEAGQGSDELyndFEHGAQLFERAAENLSKedrTALFDVASSLRRGgdVRARLAPALTASVTHLLELNPLRELVTMGENLQVRVER 194
                   **************999988888************8886699999********66667*************************************9 PP



Or compare VIMSS5916351 to CDD or PaperBLAST