PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS6861976 to PF11896 (GlgE_dom_N_S)

VIMSS6861976 has 576 amino acids

Query:       GlgE_dom_N_S  [M=179]
Accession:   PF11896.12
Description: Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase, domain N/S
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.1e-30   91.5   0.0    7.3e-30   90.7   0.0    1.4  1  VIMSS6861976  


Domain annotation for each sequence (and alignments):
>> VIMSS6861976  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.7   0.0   7.3e-30   7.3e-30       3      88 ..      11      96 ..       9     100 .. 0.97

  Alignments for each domain:
  == domain 1  score: 90.7 bits;  conditional E-value: 7.3e-30
  GlgE_dom_N_S  3 ivIedVsPevdgGrfpaKavvGeeveVeAdvfrdGhdavaatvvlraegekewrevpMtpggnDrweaeftldeeGrwefrveAWs 88
                  +vIe+++P+++gGrf  K+  G++v+ +Ad+fr+ h++  a++ +r+ ++k+w+++pM+  +nD we++ft+ ++G +e+++ AW+
  VIMSS6861976 11 LVIENIRPSIEGGRFMLKREPGDTVTLQADIFRHSHEKYDAAIFYRHVSKKKWEQAPMHFVDNDLWEGSFTVGNIGYYEYKICAWT 96
                  79********************************************999**********999***********************7 PP



Or compare VIMSS6861976 to CDD or PaperBLAST