PaperBLAST – Find papers about a protein or its homologs

 

Align WP_015036281.1 to PF11896 (DUF3416)

WP_015036281.1 has 692 amino acids

Query:       DUF3416  [M=179]
Accession:   PF11896.8
Description: Domain of unknown function (DUF3416)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-64  204.1   0.9    1.9e-64  203.4   0.9    1.4  1  WP_015036281.1  


Domain annotation for each sequence (and alignments):
>> WP_015036281.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  203.4   0.9   1.9e-64   1.9e-64       1     179 []      33     221 ..      33     221 .. 0.95

  Alignments for each domain:
  == domain 1  score: 203.4 bits;  conditional E-value: 1.9e-64
         DUF3416   1 griaIedvsPevdgGrfpaKavvGetvpVeAdvfrdGhdalaAtlvlrragekewqevpMt..pggndrweasftpdelGryeftveAWvDpfat 93 
                     gri++ dv+P vd+Gr paKav+Get++V+A+vfr+Ghda+aA++vlr  + +   ++pM+  + g+drw a++tpd++G +++tveAW+Dp+at
  WP_015036281.1  33 GRIPVLDVRPLVDCGRRPAKAVAGETFEVTATVFREGHDAVAANVVLRGPSGRPGPWTPMRelAPGTDRWGAEVTPDAEGLWTYTVEAWSDPVAT 127
                     69**********************************************766699*******99666***************************** PP

         DUF3416  94 WrhdlekkveagqdveleleeGarlleraaeraea.....aalraaaaalrdd...peerlaaalseevaallaryplrelatrseklpveVdR 179
                     Wrh +++k++ag+d el l+eGa+l eraa+   +     +a+ aaa+alrd    ++ rlaaal+++v + l+r+plrel++ s++lp++V+R
  WP_015036281.1 128 WRHTARIKIPAGIDSELVLAEGAELHERAAKGVPKkgggrEAVLAAADALRDVsrpAAVRLAAALNPRVVESLDRHPLRELLSASPALPLQVER 221
                     ******************************76655999*999999*****665666999**********************************9 PP



Or compare WP_015036281.1 to CDD or PaperBLAST