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Align SwissProt::Q66S17 to PF11901 (DUF3421)

SwissProt::Q66S17 has 364 amino acids

Query:       DUF3421  [M=115]
Accession:   PF11901.8
Description: Protein of unknown function (DUF3421)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------          -----------
    2.6e-18   52.4   6.2    8.9e-16   44.2   1.5    3.1  3  SwissProt::Q66S17  


Domain annotation for each sequence (and alignments):
>> SwissProt::Q66S17  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.2     0.013     0.013      52      92 ..      48      89 ..      37      96 .. 0.77
   2 !   44.2   1.5   8.9e-16   8.9e-16       8     114 ..      79     174 ..      72     175 .. 0.84
   3 !   18.3   0.2   9.7e-08   9.7e-08       9      51 ..     147     184 ..     142     198 .. 0.78

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.013
                       B-EEEEEE.EETT---......TTB-EETTEEEEEEEETTEE CS
            DUF3421 52 pseleWvp.ssdgqvpkgAvegGrsedgepLyigrakvegsl 92
                       +s+l+W   + +g+vp gAv+  + e+++  y++ + ++++ 
  SwissProt::Q66S17 48 QSNLQWNYwDGQGAVPDGAVSIWNGEEKRTDYVCSCGCSSGF 89
                       6677776525679********999999898898887776665 PP

  == domain 2  score: 44.2 bits;  conditional E-value: 8.9e-16
                        EEEEEEETTEEEEEEE-TTSSS.EEEEETTEEEEESEEEEEE.TTSB-EEEEEEEETT---......TTB-EETTEEEEEEEETTEEEEEEE CS
            DUF3421   8 YvgRakhegsvlpgkvvpekka.ayvsyggkehekseyevLv.akdpseleWvpssdgqvpkgAvegGrsedgepLyigrakvegslvpGkv 97 
                        Yv+++ +++      +  +++a ++++yg++e + s + +Lv + + ++leW   sdg+vpk+Ave++      ++y+g+ k+     +Gkv
  SwissProt::Q66S17  79 YVCSCGCSSGF----YSTKTGAnCHYAYGETEKTCSGFSILVnRDNFENLEWKGGSDGSVPKNAVEVCE-----KVYVGKNKY----GLGKV 157
                        55555544444....444555559******************877899******************995.....68***9885....69*** PP

                        ETTTTEEEEEETTEEEE CS
            DUF3421  98 hpshkvayipyggkEvs 114
                        h +h+ +++p++g+E++
  SwissProt::Q66S17 158 HTKHEALFLPWHGEEHW 174
                        ***************98 PP

  == domain 3  score: 18.3 bits;  conditional E-value: 9.7e-08
                        EEEEEETTEEEEEEE-TTSSSEEEEETTEEEEESEEEEEETTS CS
            DUF3421   9 vgRakhegsvlpgkvvpekkaayvsyggkehekseyevLvakd 51 
                        vg+ k       gkv  +++a +++++g+eh +++yevL+  +
  SwissProt::Q66S17 147 VGKNK----YGLGKVHTKHEALFLPWHGEEHWYKDYEVLTV-N 184
                        44433....4579**************************93.2 PP



Or compare SwissProt::Q66S17 to CDD or PaperBLAST