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Align SwissProt::Q66S21 to PF11901 (DUF3421)

SwissProt::Q66S21 has 376 amino acids

Query:       DUF3421  [M=115]
Accession:   PF11901.8
Description: Protein of unknown function (DUF3421)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------          -----------
    6.9e-17   47.8   2.9    3.7e-15   42.2   1.1    2.5  2  SwissProt::Q66S21  


Domain annotation for each sequence (and alignments):
>> SwissProt::Q66S21  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.7   0.0    0.0016    0.0016      49      72 ..      30      52 ..      14      58 .. 0.81
   2 !   42.2   1.1   3.7e-15   3.7e-15       8     114 ..      64     161 ..      53     162 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.0016
                       TTSB-EEEEEEEETT---...... CS
            DUF3421 49 akdpseleWvpssdgqvpkgAveg 72
                       ++d+++l+Wv++ +g+vp gAv+ 
  SwissProt::Q66S21 30 TNDETNLHWVKC-GGSVPDGAVSI 52
                       67899*****99.6********85 PP

  == domain 2  score: 42.2 bits;  conditional E-value: 3.7e-15
                        EEEEEEETTEEEEEEE-TTSSSEEEEETTEEEEE.SEEEEEE.TTSB-EEEEEEEETT---......TTB-EETTEEEEEEEETTEEEEEEE CS
            DUF3421   8 YvgRakhegsvlpgkvvpekkaayvsyggkehek.seyevLv.akdpseleWvpssdgqvpkgAvegGrsedgepLyigrakvegslvpGkv 97 
                        Yv++++    ++ g +  + ++++++yg+ke++  ++  +Lv + + + leW + + g+vp +Av++++++   ++y+g++     + +Gk+
  SwissProt::Q66S21  64 YVCKCF----CQAGYYSTKDSKCHYPYGTKEMATsTNCYILVnRDNFELLEWKDGYAGSVPDNAVSTCKTN---KIYVGKGA----YGLGKI 144
                        555555....556788888899***********956******8678899********************98...9****877....679*** PP

                        ETTTTEEEEEETTEEEE CS
            DUF3421  98 hpshkvayipyggkEvs 114
                         p+++++y  ++g E +
  SwissProt::Q66S21 145 EPANHCLYYVWDGAETW 161
                        **************987 PP



Or compare SwissProt::Q66S21 to CDD or PaperBLAST