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Align SwissProt::Q66S25 to PF11901 (DUF3421)

SwissProt::Q66S25 has 355 amino acids

Query:       DUF3421  [M=115]
Accession:   PF11901.8
Description: Protein of unknown function (DUF3421)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------          -----------
    1.1e-17   50.3   2.9    6.4e-16   44.7   1.1    2.5  2  SwissProt::Q66S25  


Domain annotation for each sequence (and alignments):
>> SwissProt::Q66S25  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.9   0.0    0.0014    0.0014      49      72 ..      30      52 ..      13      57 .. 0.80
   2 !   44.7   1.1   6.4e-16   6.4e-16      15     114 ..      67     160 ..      53     161 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0014
                       TTSB-EEEEEEEETT---...... CS
            DUF3421 49 akdpseleWvpssdgqvpkgAveg 72
                       ++d+++l+Wv++ +g+vp gAv+ 
  SwissProt::Q66S25 30 TNDETNLHWVKC-GGSVPDGAVSI 52
                       67999*****99.6********85 PP

  == domain 2  score: 44.7 bits;  conditional E-value: 6.4e-16
                        TTEEEEEEE-TTSSSEEEEETTEEEEESEEEEEE.TTSB-EEEEEEEETT---......TTB-EETTEEEEEEEETTEEEEEEEETTTTEEE CS
            DUF3421  15 egsvlpgkvvpekkaayvsyggkehekseyevLv.akdpseleWvpssdgqvpkgAvegGrsedgepLyigrakvegslvpGkvhpshkvay 105
                        ++++  g +  + +++++++g  e + s  e+Lv + + + leW + + g++p++Av++++++   ++y+g++     + +Gk+ p+h+++y
  SwissProt::Q66S25  67 KSNCEAGYYSTKDSKCHYPFGRVEQTTSVCEILVnRDNFELLEWKEGYAGSLPANAVSTCKTN---RIYVGKGA----YGLGKIEPAHHCLY 151
                        556667888889999*******************8678899********************98...*****877....679*********** PP

                        EEETTEEEE CS
            DUF3421 106 ipyggkEvs 114
                          ++g E +
  SwissProt::Q66S25 152 YGWNGAETW 160
                        ******987 PP



Or compare SwissProt::Q66S25 to CDD or PaperBLAST