CharProtDB::CH_123731 has 764 amino acids
Query: SYMPK_PTA1_N [M=229]
Accession: PF11935.12
Description: Symplekin/PTA1 N-terminal
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1e-60 191.3 4.3 1e-60 191.3 4.3 2.3 2 CharProtDB::CH_123731
Domain annotation for each sequence (and alignments):
>> CharProtDB::CH_123731
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 0.1 0.1 0.029 0.029 145 208 .. 28 58 .. 2 81 .. 0.50
2 ! 191.3 4.3 1e-60 1e-60 1 225 [. 96 329 .. 96 346 .. 0.86
Alignments for each domain:
== domain 1 score: 0.1 bits; conditional E-value: 0.029
SYMPK_PTA1_N 145 qlasrilsallsfnplkkaqsnntpptlsklqvksvektlkilllnllkrnassplasriqqal 208
q ++++l + ++ + k++ ++ +s+iqq++
CharProtDB::CH_123731 28 QNYPNVLRSMFNLIT---------------------------------KEPETQQQTSEIQQLI 58
444444444444444.................................2222222222222222 PP
== domain 2 score: 191.3 bits; conditional E-value: 1e-60
SYMPK_PTA1_N 1 dpavvkrviqaaasiYplvlrlvaknsndselWekltalKskilsll...........dead...ndgvklaaiKFlervvlvqtkge 74
d+a++++vi++++ iY+l++++va n+n++++W+k+t+lK+ +++++ e+d n+++kl+++KF++++++v +k++
CharProtDB::CH_123731 96 DIATLRKVIDISCVIYRLLFQYVALNDNSNQIWSKITELKNVLVNKFqsnfplppsdnTEHDllrNIATKLDLLKFMMTIIDVSSKTR 183
6899*******************************************9******99875555888**********************7 PP
SYMPK_PTA1_N 75 isdprrpe..endfslskvprnhpllkkqkLeaEAkgll.dllLkvlqeepiissslvtatlnslaiiakkRpqlasrilsallsfnp 159
i+ + ++ + +fsl++vp+nh+l+k++++e+E++ ++ ++L+v+ + +ii+++l+tatln+++ i+k++pq+++ l++++++++
CharProtDB::CH_123731 184 IIGDPIQNtnSMQFSLNDVPPNHSLIKYDQMEYESQVIFkSMVLRVF-NYDIIIAPLITATLNHCILIMKRKPQFVPLLLKTIEEYDT 270
7663333347889**************************66778877.789************************************* PP
SYMPK_PTA1_N 160 lkkaqsnntpptlsklqvksvektlkilllnllk....rnassplasriqqaleklgrllreiaelleee 225
++k+qsn+++ +++kl++k+v+++l++++ ++ k + ++++ l + +++l+e+ + +
CharProtDB::CH_123731 271 NNKLQSNYQSLEQFKLARKYVDRNLRNFISHCQKykliP-------PEFNMPLGRMANTLTER----GTN 329
**********************************65542.......44444444444444444....222 PP
Or compare CharProtDB::CH_123731 to CDD or PaperBLAST