F1LSH0 has 1280 amino acids
Query: SYMPK_PTA1_N [M=229]
Accession: PF11935.12
Description: Symplekin/PTA1 N-terminal
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.9e-62 196.3 1.2 2.9e-62 196.3 1.2 2.0 2 F1LSH0
Domain annotation for each sequence (and alignments):
>> F1LSH0
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 196.3 1.2 2.9e-62 2.9e-62 2 225 .. 123 345 .. 122 349 .. 0.91
2 ? -4.1 0.0 0.54 0.54 88 107 .. 795 815 .. 794 829 .. 0.72
Alignments for each domain:
== domain 1 score: 196.3 bits; conditional E-value: 2.9e-62
SYMPK_PTA1_N 2 pavvkrviqaaasiYplvlrlvakns...nds.elWekltalKskilslldeadndgvklaaiKFlervvlvqtkgeisd...prrpeendfslskv 91
++vvk++i++++++Y+++l++++k++ + + ++W++++++ ++i+ lld +dndg++++aiKF+e ++++ +++ +d prr +e d+sl+++
F1LSH0 123 VNVVKKAILTMTQLYKVALQWMVKSRvisDLQeACWDMVSSMAAEIILLLD-SDNDGIRTHAIKFVEGLIVTLSPR-MADsevPRR-QEHDISLDRI 216
79**********************889974445******************.777********************9.444233554.4679****** PP
SYMPK_PTA1_N 92 prnhpllkkqkLeaEAkglldllLkvlqeepiissslvtatlnslaiiakkRpqlasrilsallsfnplkkaqsnntpptlsklqvksvektlkill 188
pr+hp+++++ L +E+k l++lLk ++ +p+iss ++t+ l+sla+ia++Rp+++s++++a +++++ n+pptl+k+qv+sv+k+lk+ l
F1LSH0 217 PRDHPYIQYNVLWEEGKAALEQLLK-FMVHPAISSINLTTALGSLANIARQRPMFMSEVIQAYETLHA-------NLPPTLAKSQVSSVRKNLKLHL 305
*************************.66889************************************9.......99******************** PP
SYMPK_PTA1_N 189 lnllkrnassplasriqqaleklgrllreiaell...eee 225
l++lk++as +++++i+++l +lg+ ++eia+ + +++
F1LSH0 306 LSVLKHPASLEFQAQITTLLVDLGTPQAEIARNMpssKDS 345
******************************9998863333 PP
== domain 2 score: -4.1 bits; conditional E-value: 0.54
SYMPK_PTA1_N 88 lskvprnhpll.kkqkLeaEA 107
l+ +p+nh+l+ + ++ +EA
F1LSH0 795 LALLPQNHKLIhELAAVYTEA 815
567899999996666666666 PP
Or compare F1LSH0 to CDD or PaperBLAST