NP_001319093.1 has 1325 amino acids
Query: SYMPK_PTA1_N [M=229]
Accession: PF11935.12
Description: Symplekin/PTA1 N-terminal
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
7e-48 149.3 0.0 2.3e-47 147.6 0.0 1.9 2 NP_001319093.1
Domain annotation for each sequence (and alignments):
>> NP_001319093.1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 147.6 0.0 2.3e-47 2.3e-47 1 224 [. 100 318 .. 100 327 .. 0.91
2 ? -3.6 0.1 0.37 0.37 107 136 .. 1056 1084 .. 1055 1085 .. 0.81
Alignments for each domain:
== domain 1 score: 147.6 bits; conditional E-value: 2.3e-47
SYMPK_PTA1_N 1 dpavvkrviqaaasiYplvlrlvakns........ndselWekltalKskilsl.ldeadndgvklaaiKFlervvlvqtkgeisdprrpe.... 82
dp+v+k++i + ++ ++ +l+++a + + elW+++ ++K+ +++ l+++ +gvk+ a+KF+e+++l++t++ sdp++++
NP_001319093.1 100 DPTVAKKSISVGTTFFCTILEEMAMQFhhrgkvdrWCGELWTWMVKFKDTVFATaLEPGC-VGVKVLALKFMETFILLFTPD-ASDPEKASsegs 192
799********************773233455554667****************889999.*******************99.888887778999 PP
SYMPK_PTA1_N 83 endfslskvprnhpllkkqkLeaEAkglldllLkvlqeepiissslvtatlnslaiiakkRpqlasrilsallsfnplkkaqsnntpptlsklqv 177
+ f++s++ hp+l++++L++EA++++++l++++q+ + + +l++ ++ +la++a+kRp +++++ls+ll+f+p+ + t + ++
NP_001319093.1 193 RHMFNISWLAGGHPILNPATLMSEANRTFGILVDFIQSANRLPGALTISVISCLAVVARKRPVHYNTVLSVLLEFHPNLE--------TVKGCHA 279
99***************************************************************************544........56***** PP
SYMPK_PTA1_N 178 ksvektlkilllnllkrnassplasriqqaleklgrllreiaellee 224
+sv++++++++l +l+ ++++ +e++++llr+ ++++++
NP_001319093.1 280 ASVQYSIRTAFLGFLR--------CTFSPIIESRDKLLRAFRAMNAA 318
****************........999999**999999999888833 PP
== domain 2 score: -3.6 bits; conditional E-value: 0.37
SYMPK_PTA1_N 107 AkglldllLkvlqeepiissslvtatlnsl 136
+++ll+ +L++l +e + s ++at+++l
NP_001319093.1 1056 SENLLTYVLQILTQE-LAPSLDLIATVKHL 1084
57999*****99765.77777899999987 PP
Or compare NP_001319093.1 to CDD or PaperBLAST