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Align NP_004810.2 to PF11935 (DUF3453)

NP_004810.2 has 1274 amino acids

Query:       DUF3453  [M=226]
Accession:   PF11935.8
Description: Domain of unknown function (DUF3453)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.9e-61  191.3   1.1    1.5e-59  187.5   0.9    2.7  2  NP_004810.2  


Domain annotation for each sequence (and alignments):
>> NP_004810.2  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  187.5   0.9   1.5e-59   1.5e-59       2     224 ..     123     346 ..     122     348 .. 0.93
   2 ?    0.4   0.0     0.024     0.024      18      65 ..     677     738 ..     662     739 .. 0.74

  Alignments for each domain:
  == domain 1  score: 187.5 bits;  conditional E-value: 1.5e-59
      DUF3453   2 pavvkkvIqaaasiYplvlrliikns...eds.etWekmtalKdeIlrlvdssdndgvrlaaiKFiervilvqtrgvad...rneskeqseislsqvp 92 
                  ++vvkk+I++++++Y+++l++++k++   e + ++W+ ++a+  +I+ l+d sdndg+r++aiKF+e +i++ ++++ad   ++  +++++isl+++p
  NP_004810.2 123 VNVVKKAILTMTQLYKVALQWMVKSRvisELQeACWDMVSAMAGDIILLLD-SDNDGIRTHAIKFVEGLIVTLSPRMADseiPR--RQEHDISLDRIP 217
                  68**********************888886566******************.888*********************77766532..5679******** PP

      DUF3453  93 dnhpilsprkLeaEAkrlLdrlLkvlqeasiltsslviatlnslasiakqRpqfankilqallsfnplkkpnlpptlsklqvksvektlkvlllnllk 190
                  ++hp+++++ L +E+k  L++lLk +  ++ ++s ++++ l sla ia+qRp+f++ ++qa +++++    nlpptl k+qv+sv+k+lk  ll++lk
  NP_004810.2 218 RDHPYIQYNVLWEEGKAALEQLLK-FMVHPAISSINLTTALGSLANIARQRPMFMSEVIQAYETLHA----NLPPTLAKSQVSSVRKNLKLHLLSVLK 310
                  ************************.55779************************************9....*************************** PP

      DUF3453 191 nssehplqskiqqlleklgallqeiaavi..aeetr 224
                  ++++ ++q +i++ll +lg+ ++eia+ +   ++tr
  NP_004810.2 311 HPASLEFQAQITTLLVDLGTPQAEIARNMpsSKDTR 346
                  *************************98887755555 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.024
      DUF3453  18 lvlrliiknseds.etWekmtalKdeIlrl.v............dssdndgvrlaaiKFier 65 
                  ++l+ ++k  ed+  t+  m++l+d I+++              +s++ d+vr +a+ Fi+r
  NP_004810.2 677 SALEVVRKYCEDEsRTYLGMSTLRDLIFKRpSrqfqylhvlldlSSHEKDKVRSQALLFIKR 738
                  56777777555555****************44677777777766445589999999999987 PP



Or compare NP_004810.2 to CDD or PaperBLAST