VIMSS10104004 has 1467 amino acids
Query: SYMPK_PTA1_N [M=229]
Accession: PF11935.12
Description: Symplekin/PTA1 N-terminal
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
9.1e-44 135.8 0.0 1.3e-42 132.1 0.0 2.5 2 VIMSS10104004
Domain annotation for each sequence (and alignments):
>> VIMSS10104004
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 132.1 0.0 1.3e-42 1.3e-42 2 198 .. 97 290 .. 96 311 .. 0.85
2 ? 0.4 0.1 0.022 0.022 116 171 .. 1112 1167 .. 1104 1192 .. 0.83
Alignments for each domain:
== domain 1 score: 132.1 bits; conditional E-value: 1.3e-42
SYMPK_PTA1_N 2 pavvkrviqaaasiYplvlrlvakns......nds..elWekltalKskilsl.ldeadndgvklaaiKFlervvlvqtkgeisdprrpeendfsl 88
pav+++vi + a +++++l+ va + nd + W++l ++K++i+s+ ++ + n gvkl+a+KF+e ++l++t++e + e df++
VIMSS10104004 97 PAVARQVIACGADLFRSTLERVAVQGlhsselNDLleSSWTWLIKFKDEICSVaFK-QGNSGVKLCAMKFVEALILLYTPHEGI------EADFNI 185
89********************7633344566444469***************555.556*******************99444......689*** PP
SYMPK_PTA1_N 89 skvprnhpllkkqkLeaEAkglldllLkvlqeep..iissslvtatlnslaiiakkRpqlasrilsallsfnplkkaqsnntpptlsklqvksvek 182
s+++ hp+lk +L EA++ l+llL+ l++ + +++ss +++++nsl+++akkRp+++ ril++lls++pl+ l+ + + +
VIMSS10104004 186 SILRGGHPVLKIGDLSIEASQKLGLLLDQLRHPAakSLNSSTIIVLINSLSSVAKKRPAYCGRILPVLLSLDPLSF---------LKGVYAAATNL 272
******************************87544467788********************************655.........7999******* PP
SYMPK_PTA1_N 183 tlkilllnllk..rnass 198
+lk+++l++lk ++a++
VIMSS10104004 273 ALKTVFLSCLKctHPAAA 290
***********6543333 PP
== domain 2 score: 0.4 bits; conditional E-value: 0.022
SYMPK_PTA1_N 116 kvlqeepiissslvtatlnslaiiakkRpqlasrilsallsfnplkkaqsnntppt 171
+++ + ++ +++++ ++ln+l+ + ++ ++l+a+ f +l+ + + +++
VIMSS10104004 1112 TCFAQRQTFTQQVLAGVLNQLVQQIPLPMLFMRTVLQAIGAFPALSDFILEILSRL 1167
57778888999999********99999999************99888766655554 PP
Or compare VIMSS10104004 to CDD or PaperBLAST