PaperBLAST – Find papers about a protein or its homologs

 

Align XP_018087329.1 to PF11935 (DUF3453)

XP_018087329.1 has 1202 amino acids

Query:       DUF3453  [M=226]
Accession:   PF11935.8
Description: Domain of unknown function (DUF3453)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-58  184.5   0.4    3.6e-58  183.0   0.0    2.0  2  XP_018087329.1  


Domain annotation for each sequence (and alignments):
>> XP_018087329.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1      0.27      0.27      39      64 ..      63      87 ..      29     108 .. 0.61
   2 !  183.0   0.0   3.6e-58   3.6e-58       2     220 ..     113     333 ..     112     340 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 0.27
         DUF3453 39 lKdeIlrlvdssdndgvrlaaiKFie 64
                    + deI++   +++ + vr  +++Fie
  XP_018087329.1 63 FLDEIIAFQADKS-VEVRKIVVNFIE 87
                    3334444422233.444444444444 PP

  == domain 2  score: 183.0 bits;  conditional E-value: 3.6e-58
         DUF3453   2 pavvkkvIqaaasiYplvlrliikns...eds.etWekmtalKdeIlrlvdssdndgvrlaaiKFiervilvqtrgvad...rneskeqseisls 89 
                     ++vvkk+I++++++Y+++l++++ ++   e++ ++W+ +t++  +Il l++ sdndg+r++a+KF+e +i++ ++++ad   + + +++ +isl+
  XP_018087329.1 113 VNVVKKSILTMTQLYKVALQWVARSRppsEQQeSCWDLVTEMAADILLLLE-SDNDGMRTHAVKFVESLIVTLSPRTADsevP-K-RQDGDISLE 204
                     68**********************878886667******************.888*********************7765532.3.6789***** PP

         DUF3453  90 qvpdnhpilsprkLeaEAkrlLdrlLkvlqeasiltsslviatlnslasiakqRpqfankilqallsfnplkkpnlpptlsklqvksvektlkvl 184
                     q+p++h++l++++L + +k+  + lLk +  ++ ++s +++a l slasia+qRp+f++ ++qa +++++    nlpptl k+qv+sv+k+lk +
  XP_018087329.1 205 QIPPDHQFLKYNTLRDLGKQAVKELLK-FMAHPAISSINLTAALGSLASIARQRPMFMAEVIQAYETLHA----NLPPTLAKSQVSSVRKNLKLQ 294
                     ***************************.66889************************************9....********************* PP

         DUF3453 185 llnllknssehplqskiqqlleklgallqeiaavi...a 220
                     ll++l+++s+ ++q+ i++ll +lg+++ ei++ +    
  XP_018087329.1 295 LLSVLRHPSSYEYQGPISTLLLDLGTSQGEITRHLpppR 333
                     ******************************988776643 PP



Or compare XP_018087329.1 to CDD or PaperBLAST