biolip::6v4xJ has 311 amino acids
Query: SYMPK_PTA1_N [M=229]
Accession: PF11935.12
Description: Symplekin/PTA1 N-terminal
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1e-62 197.8 1.0 1e-62 197.8 1.0 1.6 2 biolip::6v4xJ
Domain annotation for each sequence (and alignments):
>> biolip::6v4xJ
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -2.2 0.1 0.14 0.14 51 70 .. 15 36 .. 5 64 .. 0.64
2 ! 197.8 1.0 1e-62 1e-62 2 220 .. 94 308 .. 93 310 .. 0.93
Alignments for each domain:
== domain 1 score: -2.2 bits; conditional E-value: 0.14
SYMPK_PTA1_N 51 d..ndgvklaaiKFlervvlvq 70
k+ ++K ++++++
biolip::6v4xJ 15 AliTNDSKITVLKQVQELIINK 36
4444556777777777777654 PP
== domain 2 score: 197.8 bits; conditional E-value: 1e-62
SYMPK_PTA1_N 2 pavvkrviqaaasiYplvlrlvakns...nds.elWekltalKskilslldeadndgvklaaiKFlervvlvqtkgeisd...prrpeendfslsk 90
++vvk++i++++++Y+++l++++k++ + + ++W++++a+ +i+ lld +dndg++++aiKF+e ++++ +++ +d prr+ e d+sl++
biolip::6v4xJ 94 VNVVKKAILTMTQLYKVALQWMVKSRvisELQeACWDMVSAMAGDIILLLD-SDNDGIRTHAIKFVEGLIVTLSPR-MADseiPRRQ-EHDISLDR 186
79**********************999985556******************.777********************9.5543445544.679***** PP
SYMPK_PTA1_N 91 vprnhpllkkqkLeaEAkglldllLkvlqeepiissslvtatlnslaiiakkRpqlasrilsallsfnplkkaqsnntpptlsklqvksvektlki 186
+pr+hp+++++ L +E+k l++lLk ++ +p+iss ++t+ l+sla+ia++Rp+++s++++a +++++ n+pptl+k+qv+sv+k+lk+
biolip::6v4xJ 187 IPRDHPYIQYNVLWEEGKAALEQLLK-FMVHPAISSINLTTALGSLANIARQRPMFMSEVIQAYETLHA-------NLPPTLAKSQVSSVRKNLKL 274
**************************.66889************************************9.......99****************** PP
SYMPK_PTA1_N 187 lllnllkrnassplasriqqaleklgrllreiae 220
ll++lk++as +++++i+++l +lg+ ++eia+
biolip::6v4xJ 275 HLLSVLKHPASLEFQAQITTLLVDLGTPQAEIAR 308
*****************************99976 PP
Or compare biolip::6v4xJ to CDD or PaperBLAST