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Align NP_001019411.1 to PF11938 (DUF3456)

NP_001019411.1 has 188 amino acids

Query:       DUF3456  [M=156]
Accession:   PF11938.8
Description: TLR4 regulator and MIR-interacting MSAP
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.5e-14   40.3   0.1    8.6e-13   35.3   0.1    2.7  1  NP_001019411.1  


Domain annotation for each sequence (and alignments):
>> NP_001019411.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.1   8.6e-13   8.6e-13       1     156 []      48     177 ..      48     177 .. 0.81

  Alignments for each domain:
  == domain 1  score: 35.3 bits;  conditional E-value: 8.6e-13
         DUF3456   1 kCeaCkalveeleealseedpkkevdvgsfrldskgkkkkkkipyakSElrltevleevCekmld.Yalhkekktskrvykkmsedlkelkelkd 94 
                     +C+aC+a++ ++ ++l++ + k+++  +s              + + SE  +t+vl+  C++ ++ Y++++ ++ ++ +  + s+         +
  NP_001019411.1  48 RCDACRAVAYQMGQHLAKAEAKSHTPDSS-------------GSQELSESTYTDVLDRTCSQNWQsYGVQEVNQMKRLMGPGLSKG-------PE 122
                     5******************9988844333.............34578*************888888****9999866666665322.......22 PP

         DUF3456  95 kevkvdlgipselkdep.aevkelkkaCeelveey.EdeleelfkeeeeedleekLCeerskeC 156
                     ++++        +  ++  + ++l+ +C + + e+ Ed+++e++++  +e le  LC+ + ++C
  NP_001019411.1 123 PSIS--------VMITGgPWPNRLSMTCFHYLGEFgEDQIYEAYRQ-GHETLEALLCGGTHGSC 177
                     3333........22334499**************************.79*********999988 PP



Or compare NP_001019411.1 to CDD or PaperBLAST