PaperBLAST – Find papers about a protein or its homologs

 

Align NP_001305771.1 to PF11938 (DUF3456)

NP_001305771.1 has 311 amino acids

Query:       DUF3456  [M=150]
Accession:   PF11938.12
Description: TLR4 regulator and MIR-interacting MSAP
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.9e-41  126.8   6.7      2e-33  102.1   2.3    2.2  2  NP_001305771.1  


Domain annotation for each sequence (and alignments):
>> NP_001305771.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.1     3e-10     3e-10       1      48 [.      48      92 ..      48      95 .. 0.87
   2 !  102.1   2.3     2e-33     2e-33      49     147 ..     126     236 ..     117     239 .. 0.94

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 3e-10
         DUF3456  1 kCeaCkaladeleealskvkpkkevdvggfrldkkgkrkkkkikyakS 48
                    kCe+Ck++a el++a+++++++kev+ +g+ +  +   k + +ky+kS
  NP_001305771.1 48 KCEVCKYVAVELKSAFEETGKTKEVIGTGYGILDQ---KASGVKYTKS 92
                    8******************************8843...3567777776 PP

  == domain 2  score: 102.1 bits;  conditional E-value: 2e-33
         DUF3456  49 elrltelleevCekmldYnlhkekktskr.......tlkrlasr..kgvkvelgikyelwdedsaevnkslkkaCerlvEeyEdeieelykkeqe 134
                     +lrl+e+ e++C+++ldY+lhke+++s+r       t+++l+++  kgvkv ++i+yelw+e+saev ++lkk+C+ lvEe+E++ie++y+++qe
  NP_001305771.1 126 DLRLIEVTETICKRLLDYSLHKERTGSNRfakgmseTFETLHNLvhKGVKVVMDIPYELWNETSAEV-ADLKKQCDVLVEEFEEVIEDWYRNHQE 219
                     79*****************************************999*********************.************************999 PP

         DUF3456 135 eedlekkLCser.....s 147
                     e dl+++LC+++     +
  NP_001305771.1 220 E-DLTEFLCANHvlkgkD 236
                     9.********99665544 PP



Or compare NP_001305771.1 to CDD or PaperBLAST