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Align NP_001305771.1 to PF11938 (DUF3456)

NP_001305771.1 has 311 amino acids

Query:       DUF3456  [M=156]
Accession:   PF11938.8
Description: TLR4 regulator and MIR-interacting MSAP
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.8e-45  140.0   3.9    1.6e-44  138.4   3.9    1.7  1  NP_001305771.1  


Domain annotation for each sequence (and alignments):
>> NP_001305771.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.4   3.9   1.6e-44   1.6e-44       1     153 [.      48     236 ..      48     239 .. 0.95

  Alignments for each domain:
  == domain 1  score: 138.4 bits;  conditional E-value: 1.6e-44
         DUF3456   1 kCeaCkalveeleealseedpkkevdvgsfrldskgkkkkkkipyakSE.................................lrltevleevCek 62 
                     kCe+Ck+++ el++a++e++++kev  +++ +    ++k + ++y+kS                                  lrl+ev e++C++
  NP_001305771.1  48 KCEVCKYVAVELKSAFEETGKTKEVIGTGYGIL---DQKASGVKYTKSIsdppdqmtylpssseslpiggelsssssclgrdLRLIEVTETICKR 139
                     8*******************************6...777777888888777******************************************** PP

         DUF3456  63 mldYalhkekktskrvykkmsedlkelkelkdkevkvdlgipselkdep.aevkelkkaCeelveeyEdeleelfkeeeeedleekLCeer.... 152
                     +ldY+lhke+++s+r++k+mse++++l++l++k+vkv ++ip+el++e+ aev +lkk+C+ lvee+E+ +e+++++++eedl+e+LC ++    
  NP_001305771.1 140 LLDYSLHKERTGSNRFAKGMSETFETLHNLVHKGVKVVMDIPYELWNETsAEVADLKKQCDVLVEEFEEVIEDWYRNHQEEDLTEFLCANHvlkg 234
                     ************************************************99***************************************985555 PP

         DUF3456 153 .s 153
                      +
  NP_001305771.1 235 kD 236
                     44 PP



Or compare NP_001305771.1 to CDD or PaperBLAST