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Align NP_055070.1 to PF11938 (DUF3456)

NP_055070.1 has 182 amino acids

Query:       DUF3456  [M=150]
Accession:   PF11938.12
Description: TLR4 regulator and MIR-interacting MSAP
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.3e-51  159.8   0.6    3.8e-51  159.6   0.6    1.0  1  NP_055070.1  


Domain annotation for each sequence (and alignments):
>> NP_055070.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.6   0.6   3.8e-51   3.8e-51       1     150 []      27     171 ..      27     171 .. 0.93

  Alignments for each domain:
  == domain 1  score: 159.6 bits;  conditional E-value: 3.8e-51
      DUF3456   1 kCeaCkaladeleealskvkpkkevdvggfrldkkgkrkkkkikyakSelrltelleevCekmldYnlhkekktskrtlkrlasrkgvkvelgikyel 98 
                  +C+aC+al+dele+++++v+pkk++++g+fr++++g+++  +++ya+Se++ltellee+C++m++Y ++ +++t+++ ++r+  r+g++ el  + + 
  NP_055070.1  27 HCGACRALVDELEWEIAQVDPKKTIQMGSFRINPDGSQSVVEVPYARSEAHLTELLEEICDRMKEYGEQIDPSTHRKNYVRVVGRNGESSEL--DLQG 122
                  6************************************************************************************9977655..5555 PP

      DUF3456  99 wdedsaevnkslkkaCerlvEeyEdeieelykkeqeeedlekkLCserskeC 150
                  ++ d ++++ +lk+aCe++vEeyEde++e++++ ++ +++++kLCs+r+++C
  NP_055070.1 123 IRID-SDISGTLKFACESIVEEYEDELIEFFSR-EA-DNVKDKLCSKRTDLC 171
                  5556.668899**********************.33.59***********99 PP



Or compare NP_055070.1 to CDD or PaperBLAST