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Align NP_057543.2 to PF11938 (DUF3456)

NP_057543.2 has 189 amino acids

Query:       DUF3456  [M=150]
Accession:   PF11938.12
Description: TLR4 regulator and MIR-interacting MSAP
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      1e-10   28.4   0.0    1.2e-09   24.9   0.0    2.2  1  NP_057543.2  


Domain annotation for each sequence (and alignments):
>> NP_057543.2  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.0   1.2e-09   1.2e-09       1     150 []      49     178 ..      49     178 .. 0.77

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 1.2e-09
      DUF3456   1 kCeaCkaladeleealskvkpkkevdvggfrldkkgkrkkkkikyakSelrltelleevCekmld.Ynlhkekktskrtlkrlasrkgvkvelgikye 97 
                  +C+aC+a+a ++ ++l+k + k ++ ++g      g+r       + Sel +t++l+  C++ ++ Y +++ ++ ++ t   l +  g    ++++  
  NP_057543.2  49 RCDACRAVAYQMWQNLAKAETKLHTSNSG------GRR-------ELSELVYTDVLDRSCSRNWQdYGVREVDQVKRLTGPGLSE--G----PEPSIS 127
                  6***************8888777776665......544.......57*************765554*******888875444433..3....344444 PP

      DUF3456  98 lwdedsaevnkslkkaCerlvEeyEdeieelykkeqee.edlekkLCserskeC 150
                   +        ++l++ C + + e+ ++  ++y+ +q+    le  LC   +++C
  NP_057543.2 128 VMVTG-GPWPTRLSRTCLHYLGEFGED--QIYEAHQQGrGALEALLCGGPQGAC 178
                  44334.55679************9888..788888888899******8877777 PP



Or compare NP_057543.2 to CDD or PaperBLAST