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Align NP_083996.1 to PF11938 (DUF3456)

NP_083996.1 has 350 amino acids

Query:       DUF3456  [M=156]
Accession:   PF11938.8
Description: TLR4 regulator and MIR-interacting MSAP
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.4e-14   41.1   2.6    4.1e-09   23.3   0.0    2.7  2  NP_083996.1  


Domain annotation for each sequence (and alignments):
>> NP_083996.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   4.1e-09   4.1e-09       2      63 ..      29      84 ..      28      86 .. 0.82
   2 !   16.1   1.7   6.7e-07   6.7e-07     119     156 .]      86     125 ..      83     125 .. 0.90

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 4.1e-09
      DUF3456  2 CeaCkalveeleealseedpkkevdvgsfrldskgkkkkkk.ipyakSElrltevleevCekm 63
                 C+ C++lv+++++ ++++++k+    g+         ++k   +y+ SE+rl+e++e++C++ 
  NP_083996.1 29 CQRCRTLVDKFNQGMANTARKNF-GGGN------TAWEEKTlSKYEFSEIRLLEIMEGLCDSS 84
                 *******************9766.3333......34455555******************975 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 6.7e-07
      DUF3456 119 kaCeelveeyEdeleelfke..eeeedleekLCeerskeC 156
                  + C++l+e++E++le + ++  +e+ +l e++C  + k+C
  NP_083996.1  86 FECNQLLEQQEEQLEAWWQTlkKEHPNLFEWFCVHTLKAC 125
                  78*****************9855599*******9998888 PP



Or compare NP_083996.1 to CDD or PaperBLAST