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Align NP_598691.1 to PF11938 (DUF3456)

NP_598691.1 has 420 amino acids

Query:       DUF3456  [M=156]
Accession:   PF11938.8
Description: TLR4 regulator and MIR-interacting MSAP
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.1e-16   46.5   1.3    6.5e-11   29.2   0.0    2.3  2  NP_598691.1  


Domain annotation for each sequence (and alignments):
>> NP_598691.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.0   6.5e-11   6.5e-11       2      63 ..      46     101 ..      45     103 .. 0.84
   2 !   16.6   0.4   4.6e-07   4.6e-07     118     156 .]     102     142 ..      99     142 .. 0.88

  Alignments for each domain:
  == domain 1  score: 29.2 bits;  conditional E-value: 6.5e-11
      DUF3456   2 CeaCkalveeleealseedpkkevdvgsfrldskgkkkkkkipyakSElrltevleevCekm 63 
                  C+ C+alv+++++ l+++ + +    g+    ++  +++k  +y+ SE+rl+evle+vC++ 
  NP_598691.1  46 CHTCRALVDNFNKGLERTIRDNF---GGG---NTAWEEEKLSKYKDSETRLVEVLEGVCSRS 101
                  *****************999665...332...234567777******************985 PP

  == domain 2  score: 16.6 bits;  conditional E-value: 4.6e-07
      DUF3456 118 kkaCeelveeyEdeleelfke.ee.eedleekLCeerskeC 156
                   + C++l+e  E+ +e++ ++ ++ + dl ++LC++  k C
  NP_598691.1 102 DFECHRLLELSEELVENWWFHrQQeAPDLFQWLCSDSLKLC 142
                  579****************99644589********998888 PP



Or compare NP_598691.1 to CDD or PaperBLAST