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Align NP_610547.1 to PF11938 (DUF3456)

NP_610547.1 has 189 amino acids

Query:       DUF3456  [M=156]
Accession:   PF11938.8
Description: TLR4 regulator and MIR-interacting MSAP
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.5e-37  114.5   2.6    4.2e-37  114.2   2.6    1.1  1  NP_610547.1  


Domain annotation for each sequence (and alignments):
>> NP_610547.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.2   2.6   4.2e-37   4.2e-37       1     156 []      26     172 ..      26     172 .. 0.96

  Alignments for each domain:
  == domain 1  score: 114.2 bits;  conditional E-value: 4.2e-37
      DUF3456   1 kCeaCkalveeleealseedpkkevdvgsfrldskgkkkkkkipyakSElrltevleevCekmldYalhkekktskrvykkmse......dlkelkel 92 
                  kC++Cka+v+eleea+++edp+k  dv++frld++g++ +kk+ + kSE++lte++e++Cekm+dY ++++k+++k +  km+       d + ++++
  NP_610547.1  26 KCHVCKAVVTELEEAIAKEDPHKMADVSGFRLDAQGNSISKKVRLVKSEMFLTELMEKICEKMDDYLKATYKSNGKFTLLKMIIngqmnpDSSLVDFV 123
                  8***************************************************************************9999997777777888888888 PP

      DUF3456  93 kdkevkvdlgipselkdepaevkelkkaCeelveeyEdeleelfkeee.eedleekLCeerskeC 156
                  +d++++                k+l ++C+e++e+ ++  +++f++ee  +dl+ k+C+e++ +C
  NP_610547.1 124 QDGDLN----------------KSLGHFCNEVLEDNDEIFVKAFQAEElGNDLDIKICSEQASYC 172
                  888888................************************999************9999 PP



Or compare NP_610547.1 to CDD or PaperBLAST