PaperBLAST – Find papers about a protein or its homologs

 

Align NP_689968.1 to PF11938 (DUF3456)

NP_689968.1 has 248 amino acids

Query:       DUF3456  [M=156]
Accession:   PF11938.8
Description: TLR4 regulator and MIR-interacting MSAP
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.1e-52  163.0   0.4    4.1e-52  163.0   0.4    1.4  2  NP_689968.1  


Domain annotation for each sequence (and alignments):
>> NP_689968.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.0   0.4   4.1e-52   4.1e-52       1     152 [.      37     187 ..      37     196 .. 0.96
   2 ?   -3.3   0.3      0.64      0.64     106     108 ..     220     222 ..     201     237 .. 0.47

  Alignments for each domain:
  == domain 1  score: 163.0 bits;  conditional E-value: 4.1e-52
      DUF3456   1 kCeaCkalveeleealseedpkkevdvgsfrldskgkkkkkk.ipyakSElrltevleevCekmldYalhkekktskrvykkmsedlkelkelkdkev 97 
                  kCe+Ck+l +el+ +ls++++++ev + ++ ld   + k+k+ +py++SE+rl e+le++Ce++ldY++h+e+k+s r++k++s+++++lk l++k+v
  NP_689968.1  37 KCEVCKLLSTELQAELSRTGRSREVLELGQVLD---TGKRKRhVPYSVSETRLEEALENLCERILDYSVHAERKGSLRYAKGQSQTMATLKGLVQKGV 131
                  8*******************************9...8888888******************************************************* PP

      DUF3456  98 kvdlgipselkdep.aevkelkkaCeelveeyEdeleelfkeeeeedleekLCeer 152
                  kvdlgip el+dep +ev+ lkk+Ce+++ee+Ed + +++++++e+ l+++LCe +
  NP_689968.1 132 KVDLGIPLELWDEPsVEVTYLKKQCETMLEEFEDIVGDWYFHHQEQPLQNFLCEGH 187
                  *****************************************************987 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 0.64
      DUF3456 106 elk 108
                  e +
  NP_689968.1 220 EEE 222
                  111 PP



Or compare NP_689968.1 to CDD or PaperBLAST