PaperBLAST – Find papers about a protein or its homologs

 

Align Q4V7F2 to PF11938 (DUF3456)

Q4V7F2 has 420 amino acids

Query:       DUF3456  [M=150]
Accession:   PF11938.12
Description: TLR4 regulator and MIR-interacting MSAP
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.4e-17   48.7   1.5    1.5e-10   27.9   0.1    2.4  2  Q4V7F2    


Domain annotation for each sequence (and alignments):
>> Q4V7F2  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.1   1.5e-10   1.5e-10       2      63 ..      46     101 ..      45     103 .. 0.81
   2 !   20.1   0.2   3.5e-08   3.5e-08     112     150 .]     103     142 ..     100     142 .. 0.94

  Alignments for each domain:
  == domain 1  score: 27.9 bits;  conditional E-value: 1.5e-10
  DUF3456   2 CeaCkaladeleealskvkpkkevdvggfrldkkgkrkkkkikyakSelrltelleevCekm 63 
              C+ C+al+d++++ l+++ +       +f   ++  +++k  ky+ Se+rl+e+le+vC+k 
   Q4V7F2  46 CHTCRALVDSFNKGLERTIRD------NFGGGNTAWEEEKLSKYKDSETRLVEVLEGVCSKS 101
              ***************665443......3444455556799*******************985 PP

  == domain 2  score: 20.1 bits;  conditional E-value: 3.5e-08
  DUF3456 112 kaCerlvEeyEdeieelykkeqee.edlekkLCserskeC 150
              + C+rl+E  E+ +e++ ++ q+e  dl ++LCs+  k+C
   Q4V7F2 103 FECHRLLELSEELVEAWWFHRQQEaPDLFQWLCSDSLKLC 142
              78********************************998888 PP



Or compare Q4V7F2 to CDD or PaperBLAST