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Align SwissProt::Q4G063 to PF11938 (DUF3456)

SwissProt::Q4G063 has 349 amino acids

Query:       DUF3456  [M=156]
Accession:   PF11938.8
Description: TLR4 regulator and MIR-interacting MSAP
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------          -----------
    5.2e-14   39.2   4.0    2.3e-09   24.1   0.0    2.9  3  SwissProt::Q4G063  


Domain annotation for each sequence (and alignments):
>> SwissProt::Q4G063  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   2.3e-09   2.3e-09       1      63 [.      27      83 ..      27      86 .. 0.83
   2 !   15.6   0.7     1e-06     1e-06     119     156 .]      85     124 ..      82     124 .. 0.88
   3 ?   -3.5   0.0      0.72      0.72     126     141 ..     321     337 ..     311     344 .. 0.59

  Alignments for each domain:
  == domain 1  score: 24.1 bits;  conditional E-value: 2.3e-09
            DUF3456  1 kCeaCkalveeleealseedpkkevdvgsfrldskgkkkkkk.ipyakSElrltevleevCekm 63
                       +C+ C++lv+++++ ++++++k+    g+         ++k   +y+ SE+rl+e++e++C++ 
  SwissProt::Q4G063 27 QCQRCRTLVDKFNQGMANTARKNF-GGGN------TAWEEKTlSKYEFSEIRLLEIMEGLCDSS 83
                       6*******************9766.3333......34455555******************975 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 1e-06
            DUF3456 119 kaCeelveeyEdeleelfke.ee.eedleekLCeerskeC 156
                        + C++l+e++E++le + ++ ++   +l e++C ++ k+C
  SwissProt::Q4G063  85 FECNQLLEQQEEQLEAWWQSlKKdYPNLFEWFCVRTLKAC 124
                        78******************7444889******9998888 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 0.72
            DUF3456 126 eeyEdeleelfkeee.e 141
                        ee+Ed+ ++  ++e  e
  SwissProt::Q4G063 321 EETEDACVQTAQSEVtE 337
                        66666666655553333 PP



Or compare SwissProt::Q4G063 to CDD or PaperBLAST