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Align SwissProt::Q8BQ47 to PF11938 (DUF3456)

SwissProt::Q8BQ47 has 245 amino acids

Query:       DUF3456  [M=156]
Accession:   PF11938.8
Description: TLR4 regulator and MIR-interacting MSAP
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------          -----------
    1.3e-52  164.6   0.6    1.3e-52  164.6   0.6    1.4  2  SwissProt::Q8BQ47  


Domain annotation for each sequence (and alignments):
>> SwissProt::Q8BQ47  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.6   0.6   1.3e-52   1.3e-52       1     153 [.      43     199 ..      43     202 .. 0.96
   2 ?   -3.3   0.3      0.63      0.63     126     133 ..     225     232 ..     209     240 .. 0.58

  Alignments for each domain:
  == domain 1  score: 164.6 bits;  conditional E-value: 1.3e-52
            DUF3456   1 kCeaCkalveeleealseedpkkevdvgsfrldskgkkkkkk.ipyakSElrltevleevCekmldYalhkekktskrvykkmsedlkelke 91 
                        kCe+Ck+l  el+eals++++++ev + ++ ld   + k+k+ +py+ SE+rl e+le++Ce++ldY++h+e+k+s r++k++s+++++lk 
  SwissProt::Q8BQ47  43 KCEVCKLLSMELQEALSRTGRSREVLELGQVLD---TGKRKRhVPYSLSETRLEEALENLCERILDYNVHAERKGSLRYAKGQSQTMATLKG 131
                        8*******************************9...8888888************************************************* PP

            DUF3456  92 lkdkevkvdlgipselkdep.aevkelkkaCeelveeyEdeleelfkeeeeedleekLCeer.....s 153
                        l++k+vkvdlgip el+dep +ev+ lkk+Ce+++ee+Ed + +++++++e+ l+++LCe++     +
  SwissProt::Q8BQ47 132 LVQKGVKVDLGIPLELWDEPsVEVTFLKKQCETMLEEFEDVVGDWYFHHQEQPLQHFLCERHvlpasE 199
                        ************************************************************98665544 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 0.63
            DUF3456 126 eeyEdele 133
                        ee+E+e++
  SwissProt::Q8BQ47 225 EEEEEEIT 232
                        33334433 PP



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