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Align SwissProt::Q96HD1 to PF11938 (DUF3456)

SwissProt::Q96HD1 has 420 amino acids

Query:       DUF3456  [M=156]
Accession:   PF11938.8
Description: TLR4 regulator and MIR-interacting MSAP
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------          -----------
    4.6e-15   42.7   1.3      2e-09   24.4   0.0    2.4  2  SwissProt::Q96HD1  


Domain annotation for each sequence (and alignments):
>> SwissProt::Q96HD1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0     2e-09     2e-09       2      63 ..      46     101 ..      45     102 .. 0.83
   2 !   17.0   0.6   3.7e-07   3.7e-07     119     156 .]     103     142 ..     100     142 .. 0.87

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 2e-09
            DUF3456   2 CeaCkalveeleealseedpkkevdvgsfrldskgkkkkkkipyakSElrltevleevCekm 63 
                        C+ C+ lv+ +++ l+++ + +    g+    ++  ++++  +y+ SE+rl+evle+vC+k 
  SwissProt::Q96HD1  46 CHTCRGLVDSFNKGLERTIRDNF---GGG---NTAWEEENLSKYKDSETRLVEVLEGVCSKS 101
                        *****************999665...332...234567778******************985 PP

  == domain 2  score: 17.0 bits;  conditional E-value: 3.7e-07
            DUF3456 119 kaCeelveeyEdeleelfkeee..eedleekLCeerskeC 156
                        + C++l+e  E+ +e++ ++++  + dl ++LC++  k C
  SwissProt::Q96HD1 103 FECHRLLELSEELVESWWFHKQqeAPDLFQWLCSDSLKLC 142
                        78***************9994435889*******998888 PP



Or compare SwissProt::Q96HD1 to CDD or PaperBLAST