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Align SwissProt::Q9D8I1 to PF11938 (DUF3456)

SwissProt::Q9D8I1 has 188 amino acids

Query:       DUF3456  [M=156]
Accession:   PF11938.8
Description: TLR4 regulator and MIR-interacting MSAP
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------          -----------
    1.3e-14   41.2   0.0    4.2e-13   36.3   0.0    2.7  1  SwissProt::Q9D8I1  


Domain annotation for each sequence (and alignments):
>> SwissProt::Q9D8I1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   0.0   4.2e-13   4.2e-13       1     156 []      48     177 ..      48     177 .. 0.83

  Alignments for each domain:
  == domain 1  score: 36.3 bits;  conditional E-value: 4.2e-13
            DUF3456   1 kCeaCkalveeleealseedpkkevdvgsfrldskgkkkkkkipyakSElrltevleevCekmld.Yalhkekktskrvykkmsedlkelke 91 
                        +C+aC+a++ ++ ++l++ + k+++   s  l+            + SE  +t+vl++ C++ ++ Y++h+ ++ ++ +  + s       +
  SwissProt::Q9D8I1  48 RCDACRAVAFQMGQRLAKAEAKSHTPDAS-GLQ------------ELSESTYTDVLDQTCSQNWQsYGVHEVNQMKRLTGPGLS-------K 119
                        5*******************999977776.675............89*************888888*****9998766666653.......3 PP

            DUF3456  92 lkdkevkvdlgipselkdep.aevkelkkaCeelveey.EdeleelfkeeeeedleekLCeerskeC 156
                          +++++        +  ++  + ++l+k+C + + e+ Ed+++e++++  + +le  LC+ + + C
  SwissProt::Q9D8I1 120 GPEPRIS--------VMISGgPWPNRLSKTCFHYLGEFgEDQIYEAYRQ-GQANLEALLCGGTHGPC 177
                        2334444........22334499**************************.79********9887777 PP



Or compare SwissProt::Q9D8I1 to CDD or PaperBLAST