PaperBLAST – Find papers about a protein or its homologs

 

Align CharProtDB::CH_088627 to PF12051 (DUF3533)

CharProtDB::CH_088627 has 901 amino acids

Query:       DUF3533  [M=378]
Accession:   PF12051.8
Description: Protein of unknown function (DUF3533)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence              Description
    ------- ------ -----    ------- ------ -----   ---- --  --------              -----------
    5.6e-11   28.0   1.0    5.6e-11   28.0   1.0    3.5  3  CharProtDB::CH_088627  


Domain annotation for each sequence (and alignments):
>> CharProtDB::CH_088627  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   1.0   5.6e-11   5.6e-11      17     190 ..      43     211 ..      25     221 .. 0.75
   2 ?   -0.8   2.8     0.031     0.031      97     173 ..     337     411 ..     287     430 .. 0.67
   3 !    8.2   1.3   5.7e-05   5.7e-05     168     352 ..     669     848 ..     606     874 .. 0.73

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 5.6e-11
                DUF3533  17 wGalyrrsdrlknlnvlvVneDeg..gseltpvvgeavaqainettssslgtwtvvnpsefkeseeeveelvhkekywgaivvkenat 102
                            + al ++  ++++l+++v  +D+    ++ t ++g++v ++++++       w++v+      s++e+ + v  +ky++ i+ +++++
  CharProtDB::CH_088627  43 IKALWDPYANTSQLPIAVYSADKPasFQDKTINIGDEVLKNLKKNH---QLGWKFVD------SKAELDKGVKSGKYYAGIYLPKDFS 121
                            457788889999************8867777777777777777666...356****9......9************************ PP

                DUF3533 103 eklyaal.sangass..ynstelleliy..esgRdattvssyilpaltqleaaalakygsqllqqliqslsntaqaaqlsnallaspi 185
                            ++l + +  + ++++  y+ +e ++ i    +++ a++++s+i++ + ++++  l k  +++  ++ +++ ++++++++   +l+++ 
  CharProtDB::CH_088627 122 KDLLSFTtGDIKKPQivYSINEKINAIApkITSKGASSLQSQISEEFINTASSTLLKTFNTIGYDIDKNMVSIQKVKSA---ILSTND 206
                            ******9655554431155556666665337899999999999998888887777778888888999999999988885...666665 PP

                DUF3533 186 afnsi 190
                            ++ +i
  CharProtDB::CH_088627 207 NLGTI 211
                            55555 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.031
                DUF3533  97 vkenateklyaalsangassynstelleliyesgRdattvssyilpaltqleaaala.kygsqllqqliqslsntaqa 173
                            v  +a +k+++al  + ++s++   +l++i e +++ ++v ++i +a+ + + + ++ ++ ++l++++i+++  + +a
  CharProtDB::CH_088627 337 VTLDAAKKMQSAL-PSITNSVQ--ITLQSIQEFSKNTSSVLAVIDQAIADNQLTDEEkEQINSLITNFINNIARQREA 411
                            4456777777777.22222233..336666666666666666666666555544444244455555555555544444 PP

  == domain 3  score: 8.2 bits;  conditional E-value: 5.7e-05
                DUF3533 168 sntaqaaqlsnallaspiafnsidlrPftdgvalaplqvgliyliiltffqfaflgklhaemg..lsrklkfkqllvyrllisvvslf 253
                            +  a++++      ++p++++ + + P+ +  + a++ ++ ++++ +  + ++ l  +   +    +++ + ++ ++ r+ + v   +
  CharProtDB::CH_088627 669 KLDATKESD---FWTQPVEVQENQVYPIANN-GSASTPFYTALCLWVGAVLLSSLATTEVHLSdkDKKRYSKREQFFARMGSFVAIGL 752
                            433333332...7889999999999998764.34445589999988888887777777777766555555556666669999999999 PP

                DUF3533 254 vlSlffslvs.lafqvdftvafGragFvvyWmitwlvmaavglanenvasilgppylpvwllfwvilNvss..tfvPlelspgFYryg 338
                              +l+++l +   ++vd+       ++    ++  l+ +a+ ++  ++++++g+ + +++++++v   +s   + +P+++s +F++  
  CharProtDB::CH_088627 753 AQALIVTLGNyFGLGVDV------RDPFYSVLFALLISIAFMIMVYVLVALFGNVGKGIAIIILVL-SISGggGNYPIQVSGKFFQAI 833
                            999999988878899999......3555556777788888888888999999********999875.5666589************98 PP

                DUF3533 339 yal.Plhniveilrv 352
                                P+  +v++lr 
  CharProtDB::CH_088627 834 NPYlPFTHAVNLLRE 848
                            877799999998886 PP



Or compare CharProtDB::CH_088627 to CDD or PaperBLAST